RNA id: CI01000018_04557779_04561445.mRNA


Basic Information

Item Value
RNA id CI01000018_04557779_04561445.mRNA
length 2708
RNA type mRNA
GC content 0.54
exon number 4
gene id CI01000018_04557779_04561445
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4557636 ~ 4561997 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATTTCATGAGAGTAAATTGATCATTAGATTAGCAGGGTCTATAATGATGCATTTATATTGCTGTCTTCATGTTTTTATTGAAGATGAGTAGTTCACATGACACTTTAAGGAAGATAACATTCTTTGCAATGTGATAATATTATTTGAAATCCTTTTTAAACAGCATTTTGCTAAGTCATTTAGAATTGTTATGCATGTAACTTTAATGGCTTTATATTGAGAGACTACATGGCATTGTAGTCTTAAAAATGAATTAATCAAATGTGATTAAAATGGAAATACTTAATTGGTGACCAGTCACAGGATCAAAAATTTTACACATGCCCTTATAAACATAAATATTAATGTTAATAAAAAAGTCCACGAACAGGTTATGCATAATCTATTTGGATATTAGGTTGATGTTTATAAGAAAATTGCAAATGTAAACTACACAGTGGAACTGAACAGAGATAAAGCCATAACCAGGCAGCATACGTATCTATTTAAGAGTAATTGTGATTCCTTTTTTTGTTTTTGCAATATTTGTGAGCAGCGGTTTCTGTGGTGATGGACCCTCCCGGCGGCCGAGACGAACGTCATCGTCAAGCGGAGCGGCTTCGGCGGGAGGAGGCATACTATCACTTCATTAATGAACTGAGTGAGGAGGAGTACAGACTAATGAGAGACAGCAATCTTCTGGGAACACCTGGTGAAGTCACAGCAGAGGAGCTGAGGCAGCGTCTGGATGGTGCAAAGGAGCGAGTGTCATCTCAGCCACGCCCTGAACCCCGCCCTCAGAGCAGTGAGGCAGAGGGCAGTAGCGGTGCAGTCGAGACAGGTGCTGAGACGTCTAATGGAGACTCTCTGCTGGAGTGGTTGAACACATTTCGGCGTACAGGGAATGCCACACGTAGTGGGCAGAGTGGAAACCAAACTTGGCGTGCCGTCAGCCGCACCAACCCCAACAGCGGCGAGTTCCGCTTCAGTCTTGAGATCAACATCAACCACGAGCAACCTGAGCCTGGAGAACACATGTCATCTGCCTCTGCACCCACGACCCCTTACAACCCCTCAAGGTCTGCACCTTACTCACTTCAACACCCCACGCCGTACTCTACGGCCAGGCCCACCCTGGGAAGGAGGGCCGCGGTGCGCCGCACTCGCAGCAGCACGGCTCCGCCTGTAACGCCGCCTCTGACCTCACAGGCTCCTCCCACGCCTTTGAGGAGGAACTTGCCTTCTGTGCCAAGCTCTCCTCCTCCACAGGCTCCACTCGCTTTTCAGTCACAAGAGCAGGATGGTGGTGCCGTAAGGGGTCAAATACAGGTCACAACCTCCTCGGTTAACGCAGGGGAGGGGCAGAATGGAAATGAAGGCCCGGACTGCCCCACCGCTCTGCCTCAGTCCGGCCCCCAGGTGGCGCCAGTTGCCCGTGAGCCACGAAACAGCAGGACTCGTTCACGTGGCCGCATGCGCCGGGCGGCGGGAGCAGGTGGGGCTTTGTCTCGCTCTTCGAGACGTAGCCGGTCCCCCCTGGACAGAAACCCAGCCTCCAGCGTTAGCCCCACCCATAGCAGCAGCGCTGCCCCAGTGGAGTCCACTGGAAGTACGGCTGTTGCAATGGAGATGGGCGAGGCCACCGTAGAGCCGGCTGCTACTACGGATCCTCCGGAGGCAGGTGAGGAAGAGGGGGAGACTCCTGCGTCAGGCGCTGGAGGTGTGCGGCGCCACCCCACGATCATGCTGGACCTCCAGGTGCGGCGCATTAGGCCAGGCGAGAACCGGGACAGGGACAGCATCGCTAGCCGCACTCGCTCTCGTGCTCGGGCCGCTGAAAACACGGTCACCTTTGAGAGCGACAGCGGCGGCTTCCGCCGTACCATCTCGCGCTCAGAGCGCGCGGGAATCCGCACTTACGTAAGCACTATACGCATCCCGCTGCGCCGCATTTCTGAGACGGGCCTTGGCGAGCCCAGCTCCATGGCGCTGCGATCTATCCTGCGTCAGATCATGACCGGCTTCGGTGAGCTTAGCTCCCTCATGGAGACGGAAGCGGACTCAGAGACTGCGGCACCCAACCAGGACTCCGCTCCTACTGCCGGAGCTCAGACATACCGCGTCGCTAGCGCCGAGGGAGGTGCGGCCCACGGAGGAGTGGAATCGGCACGAGAAGGTTTAGTGGAGGGTGAGGAGGAAGGACAAGTGCGGGTGAGCAGGACTGGGCCGGAGGGACGACCTAGCAGCAGGGACACTAACAACCTGGTGGAAAACGGCACATTGCCCATCCTAAGGCTGGCGCACTTTTTCCTTCTCAATGAAGACGAAGACGAGGAGCACCCACGGGGCCTCACCAAAGAACAGATCGATAATTTGGTCACACGCACTTACGGTCAGGTCAACATGGAGGGCGAGCAGGGTCGCGCTTGCAGCGTCTGCATCAATGAGTACGCTCAGGGCAACAAGCTGCGCCGCTTGCCTTGTGCCCACGAGTTCCACATCCACTGCATCGATCGCTGGCTATCCGAAAACAACACCTGTCCCATCTGCAGGCAGCCTATTCTGTCCAGCCATCAGGAATGATGTCAGGCTGTAGCTATCAATCAATGGACTGAACGAGTGACTTTTGTTCCACCTTTGGTGGAACCTGTACATAGTGCTTCAATGTTTTCATTCTCTGAGATCCATTGTATTCAAGCTAAAGGTAGAACCAAAAGCAGAAAAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119696 lncRNA downstream 103158 4454261 ~ 4454478 (-) True G105307
TU119693 lncRNA downstream 112269 4444802 ~ 4445367 (-) True G105306
TU119691 lncRNA downstream 125154 4432191 ~ 4432482 (-) True G105304
TU119664 lncRNA downstream 271644 4285739 ~ 4285992 (-) True G105277
TU119557 lncRNA downstream 319501 4234605 ~ 4238135 (-) True G105185
TU119591 lncRNA upstream 22631 4584628 ~ 4587775 (-) True G105213
TU119575 lncRNA upstream 50700 4612697 ~ 4615380 (-) False G105199
TU119574 lncRNA upstream 52757 4614754 ~ 4615380 (-) True G105199
TU119717 lncRNA upstream 59354 4621351 ~ 4621628 (-) True G105328
TU119587 lncRNA upstream 87884 4649881 ~ 4651347 (-) True G105209
CI01000018_04491510_04539751.mRNA mRNA downstream 17885 4491235 ~ 4539751 (-) True CI01000018_04491510_04539751
CI01000018_04464837_04473051.mRNA mRNA downstream 84585 4464638 ~ 4473051 (-) True CI01000018_04464837_04473051
CI01000018_04397198_04411105.mRNA mRNA downstream 146531 4396649 ~ 4411105 (-) True CI01000018_04397198_04411105
CI01000018_04361150_04364887.mRNA mRNA downstream 192749 4360619 ~ 4364887 (-) True CI01000018_04361150_04364887
CI01000018_04344907_04359005.mRNA mRNA downstream 198631 4344091 ~ 4359005 (-) True CI01000018_04344907_04359005
CI01000018_04595424_04596449.mRNA mRNA upstream 32468 4594465 ~ 4597587 (-) True CI01000018_04595424_04596449
CI01000018_04604468_04611851.mRNA mRNA upstream 41790 4603787 ~ 4611851 (-) True CI01000018_04604468_04611851
CI01000018_04627321_04645724.mRNA mRNA upstream 65172 4627169 ~ 4646182 (-) True CI01000018_04627321_04645724
CI01000018_04657706_04674073.mRNA mRNA upstream 95574 4657571 ~ 4674073 (-) True CI01000018_04657706_04674073
CI01000018_04738374_04757471.mRNA mRNA upstream 176283 4738280 ~ 4757471 (-) True CI01000018_04738374_04757471
TU119577 other downstream 311626 4243467 ~ 4246010 (-) True G105200
TU119461 other downstream 539819 4007697 ~ 4017817 (-) False G105104
TU119464 other downstream 547061 4007697 ~ 4010575 (-) True G105104
TU119324 other downstream 1057122 3482104 ~ 3500514 (-) True G104968
TU118149 other downstream 2156733 2386208 ~ 2400903 (-) True G103873
TU119553 other upstream 293084 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU120472 other upstream 1329339 5891336 ~ 6023917 (-) True G105976
TU120471 other upstream 1395609 5957606 ~ 6023917 (-) True G105976
TU121114 other upstream 1968450 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 2078615 6641872 ~ 6641956 (-) True G106487

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046331 False 4578 mRNA 0.47 4 NC_007135.7 21501842 ~ 21511737 (-)
bowfin (Amia calva) AMCG00016562 False 2160 mRNA 0.72 3 CM030122.1 25010808 ~ 25013478 (-)