RNA id: CI01000018_04657706_04674073.mRNA


Basic Information

Item Value
RNA id CI01000018_04657706_04674073.mRNA
length 3508
RNA type mRNA
GC content 0.43
exon number 24
gene id CI01000018_04657706_04674073
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4657571 ~ 4674073 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAAGTCTTTGCGCCTCTGTTCGCTGTCCATCCTATTTCATGATCACACAAGGGTCGAGGAAGAAACTGTTATGCATTCACGCGATGCGTGCAGGAAAGAGGCTTTTGACCGTAAAATGCACATTGGAAGAGACTGATTTGATGAGTTCTGACCCATTTAAACTGGACATCATTGAAGGACAAACTGTGGAAATTTACAGTGCATGTCAACAAAACAGCTCAGATGGGCTTAAATGTCTCTGCTATCAAAGGATAAATTCCTCTATGGATCCATTACAGAACACTGAGAGATTTGGAAATGGAATATACACTGTAATCTGTGGCAATCATAGTGTTACAGTTATTCAGTCACCACAAAGGAGGCCATCAGTTCCAGTGCTCAAAGCTATTGCAAAAGAAGGGAGTAGCAATTTAGCTCAATTAGTGTGTACTTCTGAGGGGAACCCAAAACCAACCATCAGGTGGTATGGTAGCAGTAAAAAACCAAAGGAGAGCATGACGAATAAGAGGTATAAGACAGAGAGCATTCTGAAGGATTACCATCATCCTGAATCTCCAAATGTAAAGTGCTGTGCCTATAATTCACTGGGAGAAGAATGTACTAAGATCTATAATTACGATCTGGTTACAAATGTGGACGGGCAAAAACCTCCTATGATTTTCCTGAAATCTGGTTGGTCTCTGCTACTCCGTTGCACCATAAAACTTAAAGACCCTGGAAACCCTGAATTGAGATGGAACTTCAATAACACAGCAGTCAAGGGAATTACTTCAATACATTTTTGGGATTGGGCAGAGCACTTTTTTATCGAATCAGTTAATGTAACACATAGTGGGGAGTACATCTGCTCATCTAAATACAACCACACTAAAACCTATGTCAAGGTCTTTGAAAATGATAAAATCGACATATTGCAGTTGAATGAGAACAACCGCATACTAGCAAAAAATAAGGCAAGCTTCTGCTTCCAGGCTCAGGTGTTCTCCTTTCCAAAAGCCCAGTGTCACTGGATTACACCAAATCAAACCGAAATACAGGGCAGAGCGACTCATCACCTTAATTTTAATAGCACTTTTGAGCTGTGTGACCCTGAACCGGGCCAGTATCAAATGAAACTAAAGACTCAAGAGTATAGTGTCACAAGGAATATCTCTCTCTGCATTTTAGACATTCATTCAATTAAAATAGGCAAAGATTCAAGCTTCACCACTTGTGAGACTCAAAGCCCTCTACCTGTGAATGTCTCTTGGAAGATCTGTCCATCACATGCTGACTGTACTGAAGATGAAGACTGGAAAGAGATGCCTGTTGCCCAGCCCAAGTTCATGGATTCAGATCAGTTCTGTCATAAGAAAATTCACTTTGCCAGACCACACTCGAACTGGGAGGACATTTATATTAAATGCTGCATCACTAACGAAGCAGGGACTGACTGCAGTGATCAAACACCAGTGCAAACGAGTTTCCGCATTGAATATGTGATTTGTTTCCTGCTCATTTTCATACTCCTCGTGGTCGTCTTTGCCTTAATCATCTTCATCAGAGTTAAGAAGCCTGCGTACCAGTGTCAGATCCAGATGATTCAGATGGTCGGACCCAATGACAATGACTACATATACATTGATTTCAAGGAGTTTAAATATGACCTGAAATGGGAATTTCCACGAGAAAATCTTGAGCTTGGAAATGAGCTAGGATCTGGTGCTTTTGGGATGGTTGTGCAGGCTACAGCATATGGGATCAGCAAGCCAGGAGTGTCCATTCAGGTAGCAGTAAAAATGTTAAAGGACAAGCACCAGGCAGTGGAGAAGGAAGCTCTGATGTCTGAACTGAAAATGCTGACTCATATTGGACACCATGAAAACATTGTCAACTTGCTCGGAGCTTGCACAGGCTCAGGTCCTATTTACCTGATATTCCAGTATTGCTGTAACGGAGATCTCTTGAACTACCTGAAGAGTAACAGGGAACGTTTTCACAAATATCTGACGGATGCTTTCAACAGGGACAGATTTAGAGGCCTCTACCACAACTTCCAGCAGAAGAGAAACTCCAGTGGGTATGTTGAGCCTGATAACAGCCCATGTCTGCACGTGACTCTTACAAGCAAAGGACAGGAGAACGAGGCACTGCTCAGTCCCAGCATCAGCTCAGTGTCTACTGTTGAGGAAATGCTTGAATGTGAAGACAAACTTCAAGAAGAGGAACTTCAGAGTCTCACCTATGATGACCTCCTGAGTTTCTCTTTTCAAGTTGCAAAGGGCATGGAGTTCCTGTCCTCTAAAAATGTGCGTTTGCCCGTGAAGTGGATGGCTCCTGAGAGTATTTTCAAAGGGGTCTACACTATGCAGAGTGACGTCTGGGCCTATGGCATTCTTCTATGGGAAATCTTTTCTCTAGGAGTCACGCCATATCCTGGTATAACTGTGAATAACGCATTCTACAGAATGATTGAAAGTGGATATCACATGGAGCAACCCTATTATGCAGCAGAATCTGTATACAGTGTAATGTGTCGCTGCTGGACACTGGATCCTGTAGATCGACCTTGTTTCTCCAAGCTTGTGGCTTTCATGGAAAAAGAGCTGGCTGCTTTGGAAGAGAGGCTATATTACAATGTCGGAGGATACTGCCACAATGAAGTAACATACCAGAATGCACCAGTGACCCCTGATGCTACATTGATGGAGAATAAACAGGATGTCTACCGGTCCAGCACTGAGGATTCACATGAATGCGAATCCATGCACAGTCTTGGATCAAGTTGCCTACTTGCCCCAACGGACATTGACCTCGTCCAGTATTGGCTTTTGCCATTTCCAGAACAGTTTGTAGAGGACATGGCCATGGACATAAGTGTTGTAAATGCTCTCACATACGAGGAATTTGTGAATCTATTCGGTAATGTGGTTGAGAAATGCCCCATCATTTCTGCTGCAATATGGTCCCACCGGCCTTTCAAAGATCTAGCAGACATCGAGGCTCACATAATGGGATTCATTCACAGTCTACCAGACTCAGGTAAAGAGGGCATTTTGCGGTGTCATCCTGATTTGGCGGGCCGAGATCTCCAGAGCGGGACACTAACACGGGAGTCTCAAGAAGAGCAGAGTCAAGCCGGTATGACCACACTGGATTCTGCAGAGATTCAGCACATGTACCGTCTAAACTCGAAGTACAAGGAACGCTTTGGCTTCCCTTTTGTCATCTGCGCCCGCCTCAACAACAAAGCGGATATTGTGCGCCAACTGACTGAACGCCTGAAGAATGACCGCGCAGAGGAGCGGGAGCGCGCGATCGAAGAGGTTAAAAAAATCTGTAGCCTCAGGTTAAACAATATTGTCCTATCTGACATTCAAACCAAACTGTGACTCAAGTTAACTTTACAAAAGTGTTTACTGCCTCTCTCTAGGTACTTGATTGTATATCATTTTAATTTGTATGTTAATTTGTGTAAAATAAGAAAACACAAAAAGCAAGTAGGCTAGCCTATGCTGACAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119587 lncRNA downstream 6224 4649881 ~ 4651347 (-) True G105209
TU119717 lncRNA downstream 35943 4621351 ~ 4621628 (-) True G105328
TU119575 lncRNA downstream 42191 4612697 ~ 4615380 (-) False G105199
TU119574 lncRNA downstream 42191 4614754 ~ 4615380 (-) True G105199
TU119591 lncRNA downstream 69796 4584628 ~ 4587775 (-) True G105213
TU119725 lncRNA upstream 67588 4741661 ~ 4741921 (-) True G105336
TU119739 lncRNA upstream 93538 4767611 ~ 4768386 (-) True G105350
TU119804 lncRNA upstream 584239 5258312 ~ 5258511 (-) True G105413
TU119597 lncRNA upstream 608633 5282706 ~ 5284386 (-) True G105219
TU119861 lncRNA upstream 690977 5365050 ~ 5489735 (-) True G105464
CI01000018_04627321_04645724.mRNA mRNA downstream 11389 4627169 ~ 4646182 (-) True CI01000018_04627321_04645724
CI01000018_04604468_04611851.mRNA mRNA downstream 45720 4603787 ~ 4611851 (-) True CI01000018_04604468_04611851
CI01000018_04595424_04596449.mRNA mRNA downstream 59984 4594465 ~ 4597587 (-) True CI01000018_04595424_04596449
CI01000018_04557779_04561445.mRNA mRNA downstream 95574 4557636 ~ 4561997 (-) True CI01000018_04557779_04561445
CI01000018_04491510_04539751.mRNA mRNA downstream 117820 4491235 ~ 4539751 (-) True CI01000018_04491510_04539751
CI01000018_04738374_04757471.mRNA mRNA upstream 64207 4738280 ~ 4757471 (-) True CI01000018_04738374_04757471
CI01000018_04759598_04770734.mRNA mRNA upstream 85436 4759509 ~ 4770734 (-) True CI01000018_04759598_04770734
CI01000018_04773554_04792048.mRNA mRNA upstream 99153 4773226 ~ 4792048 (-) True CI01000018_04773554_04792048
CI01000018_04798056_04800698.mRNA mRNA upstream 123905 4797978 ~ 4800698 (-) True CI01000018_04798056_04800698
CI01000018_04803745_04804788.mRNA mRNA upstream 129044 4803117 ~ 4804796 (-) True CI01000018_04803745_04804788
TU119577 other downstream 411561 4243467 ~ 4246010 (-) True G105200
TU119461 other downstream 639754 4007697 ~ 4017817 (-) False G105104
TU119464 other downstream 646996 4007697 ~ 4010575 (-) True G105104
TU119324 other downstream 1157057 3482104 ~ 3500514 (-) True G104968
TU118149 other downstream 2256668 2386208 ~ 2400903 (-) True G103873
TU119553 other upstream 181008 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU120472 other upstream 1217263 5891336 ~ 6023917 (-) True G105976
TU120471 other upstream 1283533 5957606 ~ 6023917 (-) True G105976
TU121114 other upstream 1856374 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 1966539 6641872 ~ 6641956 (-) True G106487

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046341 True 3849 mRNA 0.41 24 NC_007135.7 21691939 ~ 21713883 (-)