RNA id: CI01000018_04856240_04875704.mRNA


Basic Information

Item Value
RNA id CI01000018_04856240_04875704.mRNA
length 1771
RNA type mRNA
GC content 0.42
exon number 5
gene id CI01000018_04856240_04875704
representative False

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4855081 ~ 4876532 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAATGTTTATTTGAGGAACTCCATTGTGTTATGTAGGCCTACTTGAGCAAGACCGACATGATTCACTTTCCCCCAGAGTGTAAAATTGTGTTCATTGTATTTTTGATGAGAACAGTGTGTTTTCTTTGCTACTTATAGCATCTAACCCTGTTTGGTGCAGTAGTGATTTGCAGTCTAAATGACCACTCACACTGTCAGCAGTGTTCTTGAATAAAGCAAACAGCTTTCCAGACATAAATAACTCTTTTTTGAAAAGGTTGTTATGTCTGCTAACATTTTCCAGACATTATATTTATCCTTCATACATCTTAACGATGAGTTCATTGACTCCATGATGGAGATCTCATCTCATGATGTGAATAATATTTTGCATGACTTTTAACATATTAAAAGTAGTACTATTGATTTCTTTAGGGGTGCTTTTTCTAATTAAAAAAATGATTTATTAATTTTTTTTCTTGCTACTTTTTCTTTTGATGAAAGCAAAGAACATTTTCTTCCCGCTCTCTATCTAAAATATGCGACCTGTGGGCATATTAATAAAAGTTACACAGCTCTGCATGCTGATTTGTATTTTCTGATTTTCCCCGTATGTACCATTGGACTTTCCATAGTAAAGAGGTGGAACGTCCTTTCTCAATAAACGCTCTTATTGGTTGTAGCGACCACTGCCGTCATCACGCACCGTTGCCAAACAATGGGCAGGGAAAAGCCACGTTGACGAACTCGACAGTAGTCTGCGTTATTTTCATCCAGGAAACAGAAGGATTGTTTTGTATTTTGAAGACAACGAAGAAATTCTTTAGAAGAAGCGCTTGACAGCAACCATGTCATCGCCGCCCAAAGAGAAAATCGAAACAAAAGCTGGACATCTCCCTGCTGTGAAAGTAGGAGGAGGCATGAGGATAGTTCAGAAGCACCAGTCTGCAAATGACGTGCCAGACAAGAAACAAGATGAGAAAGACAGTAAAGAATATGAGACTGAGCCCAGAGAGATGGCCTGTAAGCAGGTGGCTTCTGATGAAAAAATTGCACATTTGTCGAGGCAAGTCAAGTGGCACTGTCTGGGGACCACCTGTCAAATGCAATTTGGTCTTCTCAGATGGATGGATGGCAAATGGAATAGCTCTGAGATGCTAATGTGGTGTGCTATGCTGGTGAGCTCACTCTTTGACGTCCCACCAAAGCTGCCTGTTGTGGTCTCAGGAGTTGTCACTAAGGGGGATAAAGACTTCACTCCTGCTGCTGCCCAGGTGGCCCATCAGAAACCTGTGCCCTCGGTACAGAAGCTTCCTTCGGCCCACCACATCAACCAGCACATCCACCAGCCTCGGAAGTGAGCCCTTAACCCAGCTCTAGACCATCATGGGCCCCCCACACGAGGCCAGGACCACACCACCCCAAACACCTGCTCAGGTTGCCAGGGATCTCTTGCCGTCAAGCATTCCGTACACACCCTCCCCCCACCCCCTTCCGTCTGTGCCTGCAAGTGTCCTGTTTTGACCAGTATCATGACAAACGTTCCATTTTCTCTTACCTGTAAATCATTGCAACACTAAAATTGAAGGCTCCATTGCGAATCACTAATCAGAAACATGTTAATTCTGTGGGTTCATTTCATGAGGGATATGTGGAGCTGTGTTTTATTTTGTTTTAATTTTGTTTTACATGAATAGTTCCAGAGAGATGTAAATTGTATAAATCATTTTTTTGAACTTGGTGAATGTTGTATATTAGGCATTAGGTACTAGGTGTGGTTATCTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119739 lncRNA downstream 87424 4767611 ~ 4768386 (-) True G105350
TU119725 lncRNA downstream 113889 4741661 ~ 4741921 (-) True G105336
TU119587 lncRNA downstream 204463 4649881 ~ 4651347 (-) True G105209
TU119717 lncRNA downstream 234182 4621351 ~ 4621628 (-) True G105328
TU119574 lncRNA downstream 240430 4614754 ~ 4615380 (-) True G105199
TU119804 lncRNA upstream 381780 5258312 ~ 5258511 (-) True G105413
TU119597 lncRNA upstream 406174 5282706 ~ 5284386 (-) True G105219
TU119861 lncRNA upstream 488518 5365050 ~ 5489735 (-) True G105464
TU119933 lncRNA upstream 617304 5493836 ~ 5494106 (-) True G105526
TU120433 lncRNA upstream 789321 5665853 ~ 5666088 (-) True G105939
CI01000018_04832762_04833610.mRNA mRNA downstream 22042 4832354 ~ 4833768 (-) True CI01000018_04832762_04833610
CI01000018_04827973_04829957.mRNA mRNA downstream 25853 4827973 ~ 4829957 (-) True CI01000018_04827973_04829957
CI01000018_04825678_04826167.mRNA mRNA downstream 29643 4825441 ~ 4826167 (-) True CI01000018_04825678_04826167
CI01000018_04817413_04821724.mRNA mRNA downstream 34086 4816903 ~ 4821724 (-) True CI01000018_04817413_04821724
CI01000018_04811791_04814940.mRNA mRNA downstream 39332 4811638 ~ 4816478 (-) True CI01000018_04811791_04814940
CI01000018_04887828_04984375.mRNA mRNA upstream 10440 4886972 ~ 4984400 (-) True CI01000018_04887828_04984375
CI01000018_05008490_05017148.mRNA mRNA upstream 131877 5008409 ~ 5018442 (-) True CI01000018_05008490_05017148
CI01000018_05037255_05110400.mRNA mRNA upstream 160723 5037255 ~ 5110400 (-) True CI01000018_05037255_05110400
CI01000018_05163296_05172812.mRNA mRNA upstream 286495 5163027 ~ 5172812 (-) True CI01000018_05163296_05172812
CI01000018_05222497_05243379.mRNA mRNA upstream 345965 5222497 ~ 5243379 (-) True CI01000018_05222497_05243379
TU119577 other downstream 609800 4243467 ~ 4246010 (-) True G105200
TU119461 other downstream 837993 4007697 ~ 4017817 (-) False G105104
TU119464 other downstream 845235 4007697 ~ 4010575 (-) True G105104
TU119324 other downstream 1355296 3482104 ~ 3500514 (-) True G104968
TU118149 other downstream 2454907 2386208 ~ 2400903 (-) True G103873
TU120472 other upstream 1014804 5891336 ~ 6023917 (-) True G105976
TU120471 other upstream 1081074 5957606 ~ 6023917 (-) True G105976
TU121114 other upstream 1653915 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 1764080 6641872 ~ 6641956 (-) True G106487

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00016643 False 2886 mRNA 0.46 7 CM030122.1 26585396 ~ 26591527 (-)