RNA id: TU120471


Basic Information

Item Value
RNA id TU120471
length 102
RNA type TUCP
GC content 0.41
exon number 2
gene id G105976
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 5891336 ~ 6023917 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGAACTCCTCTTCAGATAGCAGAAATTGACAGTGAATTTGTGAGCAGCAGTGCAGACATGAAGGTGGCTATTGCAGTCTTGTGTCTGATGTGGATGTCCTTGTGCGAGAGCCGCACAATGGGCCGTTGTGAAGTCGTCAAAATCTTCAGGGCAGAGGGACTTGATGGCTTTGAGGGATTCTCTCTTGGCAACTATGTGTGCACGGCCTACTGGGAAAGCAGGTTTAAGACCCAAAGAGTGCGTACGGCTGATGTTGGGAAAGACTATGGAATCTTCCAGATAAACAGTTTCAAATGGTGTGATGATGGCACTCCGGATGGAAAGAACTTATGCAACTTGCCTTGTTCAGATTTGCTTAAGGATGACCTGAAACCTTCAGTTGAATGTGCAAAGCTCATTGTGAAAACCGGAGGACTGAAATCATGGGAAACCTGGGATAGTTACTGTAATGGCCGTAAGATGAAACGCTGGACAAAAGGTTGCGAATCGCACTAATAAGGCCTTGATTGCCTGAGGGATCTTTAATTACCTATAATGATCATGTCCTAATGCAGTTTAAACTCTTGGTTGATGTGACTTTTAAAACATTGTCATCATTAATGTAACATTGTATCCTTGATCTTCAGATGTATATTAAAGCATCTTCCCAAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAGAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120515 lncRNA downstream 110047 5847345 ~ 5847559 (-) True G106017
TU120511 lncRNA downstream 158220 5799157 ~ 5799386 (-) True G106013
TU120450 lncRNA downstream 235757 5721518 ~ 5721849 (-) True G105956
TU120442 lncRNA downstream 260496 5696758 ~ 5697110 (-) True G105948
TU120433 lncRNA downstream 291518 5665853 ~ 5666088 (-) True G105939
TU120579 lncRNA upstream 17284 6043160 ~ 6043390 (-) True G106077
TU120599 lncRNA upstream 149556 6175432 ~ 6175649 (-) True G106096
TU121028 lncRNA upstream 226923 6252799 ~ 6253046 (-) True G106477
TU121030 lncRNA upstream 242591 6268467 ~ 6268704 (-) True G106479
TU121071 lncRNA upstream 354877 6380753 ~ 6383489 (-) True G106498
CI01000018_05910381_05911415.mRNA mRNA downstream 46191 5910118 ~ 5911415 (-) True CI01000018_05910381_05911415
CI01000018_05905787_05908656.mRNA mRNA downstream 48924 5905525 ~ 5908682 (-) True CI01000018_05905787_05908656
CI01000018_05870993_05880212.mRNA mRNA downstream 76901 5870313 ~ 5880705 (-) True CI01000018_05870993_05880212
CI01000018_05864737_05869576.mRNA mRNA downstream 88030 5864455 ~ 5869576 (-) True CI01000018_05864737_05869576
CI01000018_05827740_05839214.mRNA mRNA downstream 118392 5827576 ~ 5839214 (-) True CI01000018_05827740_05839214
CI01000018_06027217_06038423.mRNA mRNA upstream 1115 6026991 ~ 6038423 (-) True CI01000018_06027217_06038423
CI01000018_06052815_06056229.mRNA mRNA upstream 26835 6052711 ~ 6056354 (-) True CI01000018_06052815_06056229
CI01000018_06057137_06059021.mRNA mRNA upstream 31010 6056886 ~ 6059075 (-) True CI01000018_06057137_06059021
CI01000018_06066391_06085051.mRNA mRNA upstream 40515 6066391 ~ 6085051 (-) True CI01000018_06066391_06085051
CI01000018_06086167_06089014.mRNA mRNA upstream 60196 6086072 ~ 6089014 (-) True CI01000018_06086167_06089014
TU119553 other downstream 1081767 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU119577 other downstream 1711596 4243467 ~ 4246010 (-) True G105200
TU119461 other downstream 1939789 4007697 ~ 4017817 (-) False G105104
TU119464 other downstream 1947031 4007697 ~ 4010575 (-) True G105104
TU119324 other downstream 2457092 3482104 ~ 3500514 (-) True G104968
TU121114 other upstream 504571 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 614736 6641872 ~ 6641956 (-) True G106487

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046403 False 603 mRNA 0.46 4 NC_007135.7 24035863 ~ 24038800 (-)