RNA id: TU119717


Basic Information

Item Value
RNA id TU119717
length 278
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G105328
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4621351 ~ 4621628 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGAACCGATTCACTAGAATGAATTGAACTACCCATTGTTATAAGAAAGAGGACTGTCCGAATGTTCTTCAATAGCATGGATGAACCGATTCACTACAATAAATTTTACTACAACATTAAAGGATTAGTTCACTTTAAAATAAAAATTACCCCAAGATTTACTCACCCTCAAGCCATCCCAGGTGTATATGACTTTCTTCTTTCTGATGAACACAATCAGAGTTATATTAATAAATATCCTGATGCATCCAAGCTTTATAATGGCAGTAAATGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119575 lncRNA downstream 5971 4612697 ~ 4615380 (-) False G105199
TU119574 lncRNA downstream 5971 4614754 ~ 4615380 (-) True G105199
TU119591 lncRNA downstream 33576 4584628 ~ 4587775 (-) True G105213
TU119696 lncRNA downstream 166873 4454261 ~ 4454478 (-) True G105307
TU119693 lncRNA downstream 175984 4444802 ~ 4445367 (-) True G105306
TU119587 lncRNA upstream 28253 4649881 ~ 4651347 (-) True G105209
TU119725 lncRNA upstream 120033 4741661 ~ 4741921 (-) True G105336
TU119739 lncRNA upstream 145983 4767611 ~ 4768386 (-) True G105350
TU119804 lncRNA upstream 636684 5258312 ~ 5258511 (-) True G105413
TU119597 lncRNA upstream 661078 5282706 ~ 5284386 (-) True G105219
CI01000018_04604468_04611851.mRNA mRNA downstream 9500 4603787 ~ 4611851 (-) True CI01000018_04604468_04611851
CI01000018_04595424_04596449.mRNA mRNA downstream 23764 4594465 ~ 4597587 (-) True CI01000018_04595424_04596449
CI01000018_04557779_04561445.mRNA mRNA downstream 59354 4557636 ~ 4561997 (-) True CI01000018_04557779_04561445
CI01000018_04491510_04539751.mRNA mRNA downstream 81600 4491235 ~ 4539751 (-) True CI01000018_04491510_04539751
CI01000018_04464837_04473051.mRNA mRNA downstream 148300 4464638 ~ 4473051 (-) True CI01000018_04464837_04473051
CI01000018_04627321_04645724.mRNA mRNA upstream 5541 4627169 ~ 4646182 (-) True CI01000018_04627321_04645724
CI01000018_04657706_04674073.mRNA mRNA upstream 35943 4657571 ~ 4674073 (-) True CI01000018_04657706_04674073
CI01000018_04738374_04757471.mRNA mRNA upstream 116652 4738280 ~ 4757471 (-) True CI01000018_04738374_04757471
CI01000018_04759598_04770734.mRNA mRNA upstream 137881 4759509 ~ 4770734 (-) True CI01000018_04759598_04770734
CI01000018_04773554_04792048.mRNA mRNA upstream 151598 4773226 ~ 4792048 (-) True CI01000018_04773554_04792048
TU119577 other downstream 375341 4243467 ~ 4246010 (-) True G105200
TU119461 other downstream 603534 4007697 ~ 4017817 (-) False G105104
TU119464 other downstream 610776 4007697 ~ 4010575 (-) True G105104
TU119324 other downstream 1120837 3482104 ~ 3500514 (-) True G104968
TU118149 other downstream 2220448 2386208 ~ 2400903 (-) True G103873
TU119553 other upstream 233453 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU120472 other upstream 1269708 5891336 ~ 6023917 (-) True G105976
TU120471 other upstream 1335978 5957606 ~ 6023917 (-) True G105976
TU121114 other upstream 1908819 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 2018984 6641872 ~ 6641956 (-) True G106487

Expression Profile