RNA id: TU119933


Basic Information

Item Value
RNA id TU119933
length 271
lncRNA type intronic
GC content 0.36
exon number 1
gene id G105526
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 5493836 ~ 5494106 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGTTTACAACTGAACAGAGGCATAAGGGGGGGAAAAGAAGGGAAATGCTCATATAAATGAACATTTATACGCCATTATAACAAGGGTTTACATAAATGTAAAGCTTTTGCTTTAAGTTTAACATTTTGTTTTGCTTGTGAAAACATAGCGAATGGCAACTGTTTTGTGAAATGCTCTCCGCATGTGCTTAGTTTTCGTAATGCAATGTATAATCAGCTAGGAGGGGACGTCTGTTTTTTATTTACTGAAATGCCTTTTTTGTTACCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119861 lncRNA downstream 4101 5365050 ~ 5489735 (-) True G105464
TU119597 lncRNA downstream 209450 5282706 ~ 5284386 (-) True G105219
TU119804 lncRNA downstream 235325 5258312 ~ 5258511 (-) True G105413
TU119739 lncRNA downstream 725450 4767611 ~ 4768386 (-) True G105350
TU119725 lncRNA downstream 751915 4741661 ~ 4741921 (-) True G105336
TU120433 lncRNA upstream 171747 5665853 ~ 5666088 (-) True G105939
TU120442 lncRNA upstream 202652 5696758 ~ 5697110 (-) True G105948
TU120450 lncRNA upstream 227412 5721518 ~ 5721849 (-) True G105956
TU120511 lncRNA upstream 305051 5799157 ~ 5799386 (-) True G106013
TU120515 lncRNA upstream 353239 5847345 ~ 5847559 (-) True G106017
CI01000018_05412935_05458370.mRNA mRNA downstream 35394 5412710 ~ 5458442 (-) True CI01000018_05412935_05458370
CI01000018_05222497_05243379.mRNA mRNA downstream 250457 5222497 ~ 5243379 (-) True CI01000018_05222497_05243379
CI01000018_05163296_05172812.mRNA mRNA downstream 321024 5163027 ~ 5172812 (-) True CI01000018_05163296_05172812
CI01000018_05037255_05110400.mRNA mRNA downstream 383436 5037255 ~ 5110400 (-) True CI01000018_05037255_05110400
CI01000018_05008490_05017148.mRNA mRNA downstream 475394 5008409 ~ 5018442 (-) True CI01000018_05008490_05017148
CI01000018_05528561_05576788.mRNA mRNA upstream 34455 5528561 ~ 5576788 (-) True CI01000018_05528561_05576788
CI01000018_05588289_05597432.mRNA mRNA upstream 93853 5587959 ~ 5597822 (-) True CI01000018_05588289_05597432
CI01000018_05667742_05668807.mRNA mRNA upstream 173513 5667619 ~ 5669240 (-) True CI01000018_05667742_05668807
CI01000018_05803227_05816159.mRNA mRNA upstream 308803 5802909 ~ 5816493 (-) True CI01000018_05803227_05816159
CI01000018_05820608_05821533.mRNA mRNA upstream 325804 5819910 ~ 5821533 (-) True CI01000018_05820608_05821533
TU119553 other downstream 617997 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU119577 other downstream 1247826 4243467 ~ 4246010 (-) True G105200
TU119461 other downstream 1476019 4007697 ~ 4017817 (-) False G105104
TU119464 other downstream 1483261 4007697 ~ 4010575 (-) True G105104
TU119324 other downstream 1993322 3482104 ~ 3500514 (-) True G104968
TU120472 other upstream 397230 5891336 ~ 6023917 (-) True G105976
TU120471 other upstream 463500 5957606 ~ 6023917 (-) True G105976
TU121114 other upstream 1036341 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 1146506 6641872 ~ 6641956 (-) True G106487

Expression Profile