RNA id: CI01000021_06786996_06789224.mRNA


Basic Information

Item Value
RNA id CI01000021_06786996_06789224.mRNA
length 2551
RNA type mRNA
GC content 0.37
exon number 2
gene id CI01000021_06786996_06789224
representative False

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 6786861 ~ 6790962 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAAAGAAAGATGGATTTAACAGCGGCCTTCACCAACCTCCACCACAAAGAGGAGGTATATTCCCTCCCATTTTGAAAGCTGGCTAAATTATTTGGATGACACAAGTCTTAAAACCATCTATTGGGTTGGCATGCAGAGTGGCCCATTGGTGGATTTGCCAGAGATGGGGAGCTACACTTGGAGGGGGTACATCCTTATCTGTGTGCTTAGGTGTGTGAAGGGTTTCTCAAACTCCAAACCAGTGCCTGCGCCCATAATAGAACCAGAGGTAGAGCCCACGCCTGCCATGGACCCAGCGCTGGAATCCACTCCCAGGTCAATCCCAGATTGCCAATTGCCAGGGCTCAGAGGTAGAGTCGGGCCGACAGGAAAACTCGGAGAGCGCGGGGAGAGAGGTTTCATTGGGAAGCGTGGACCTGAGGGTGATCCTGGAGATTTGGGGTCTCCTGGTCCTCCAGGACGTCTTGGACAGAAGGGTGACAAGGGCCAACGTGGCCCTCCGGGAGAACCAGGTATCTGCAGATGTGGAAGTTTGGTTCCCAAATCCGCTTTCTCTGTAGGCATCACCAGTAGCTACCCCACTGAACAAACACCTATCAAGTTCAACAAAGTCCTGTTTAATGAAGGTGGCCACTACAACCCCGAGACTGGAAAATTTATCTGTGCATACCCAGGAATATACTACTTTTCTTATGACATCACTCTGGCCAACAAGCACCTGGCCATTGGGCTGGTCCAGAACGGACAGTACCGGATAAAGACTTTTGATGCCAACACCGGAAACCACGACGTGGCGTCTGGCTCAACCGTGATGTTTCTCAACCCAGAGGATGAGGTATGGCTGGAGATCTTCTACAGGGACCAGAACGGCTTGTTTGCTGACCCTGGCTGGGCTGACAGTCTGTTCTCTGGGTTTTTACTTTATGCAGATACAAACTATATGGATACATTGGCGGAAGACTACAAATAGCAGCACACTAATATACGGTGCTACCTATGGCCTGTCCATCCCTGTCTTTGACCCTGGATTGGGTTGTTCTGTTTTTTCAGCATCTCACGCCATGAACACTGCATTTCCAGACACAGTTTTAATTTATAAAAAGCAGTTACGTAAAAAAAAAAAAAAAAAATCAGTACAAAACTTGTCTCAAGAACCCTGCATTCTGTTCAATTCAGCTGTTTTTGCATGGAAGAACATCTGACTTGCTGGATGTCACCATGTATATTGTTGACACAAAATAGTTTCTGCTGAAAATGATGTTGTTACCGATCATACAAATAAGAATGAGATCCCTTTTTGATACTCTTGTATATACTGATTATTGATCTGTGTGAAAAAGTCAATCACGCAATTATGATCACTTAATGTCACACTTTTTTAACCCATCCTTAATGCTAACGGTTTCAACTGAGCATTTTATATATATATATATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATATATATATATATATAGGGTTGGGGAGTAACGAAATACATGTAACTTAGTTATGTATTTAAAATACAAATTTTGAGTAACTGTATTTTATTACAGTTACATTTTAAATGGGTGGTAATCAAATTACAGTTACATCCGAAAAGTATTTTAGATTACCAAAGATTACTTTGAAGTTTTATGTCATTTATTTCATTTAAACATGAATGTAAACTGTGATGGGCAATTAATGTAAACAGCAATTGGTGATTCTCTGACAGTCTGCAAAAGCATCCTAAGCTACATTTCTACTCCTAAGTTTCATACCCTTGCAGAATATGCAACATTTTAATAATTTTAACAAAATAAGAGAGATCATAAAAATTGCATGTTATTATATAGTACTTTCCTGAATAAGCTATTTCACATAACAGATGTTCACATATAGTGCACAAGACAAAATGACTGAATTTATAAAAATTGCCTCATTCAAAAATTTACATACCCTTGAATCTTAATTGTCCTGTCATTACCTGGATGATCCACGACTGTTTTCATGTTTTGCAATAGTTGTTTGTGAGTCCATGTAATTGTAAAAAAAAAAAAAAAAAAAAAAGGGTAATTGCGACTTTTTATCTCTATGAGTTTAAATCTCGCAATTGCGTTTTATAAAGGTAGATTTGGGAGGCATAAAAAAGAAAAAAAGTTTATCACGCAATCCTGACTTTATAACTTGCAATTGTGAGTTTATATCTCCCAATTCTGATTTATTTTCTTGCAATTCGGACTTTTTTTCATAAAATTGAGTTTATATCTCAGAATTCTGACTTTATAACTCACAACTGCAACTTTATATCACGCAATTCTGAGAAAAAAGTCCGAATTGTGAGATAAAAACTCGCAGTTACCTTTTTTTGTGTTACAAACCTATTAGTATTCCAAAATATTCTAAAGTATTTAGATTAAGTTACAAAACTTGGGTAATCTACAAAATGTACAAAAGTATTGTTTAATTTGCTGACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135910 lncRNA upstream 15782 6743219 ~ 6771079 (+) True CI01000021_06746518_06768316
TU135902 lncRNA upstream 50483 6736161 ~ 6736378 (+) True G119693
TU135901 lncRNA upstream 53165 6733328 ~ 6733696 (+) True G119692
TU135899 lncRNA upstream 56137 6730482 ~ 6730724 (+) True G119690
TU135898 lncRNA upstream 57048 6729596 ~ 6729813 (+) True G119689
TU135948 lncRNA downstream 88952 6879752 ~ 6880618 (+) True G119724
TU135954 lncRNA downstream 158673 6949473 ~ 6951481 (+) True G119730
TU135955 lncRNA downstream 161927 6952727 ~ 6952936 (+) True G119731
TU135971 lncRNA downstream 184987 6975787 ~ 6976016 (+) True G119747
TU135974 lncRNA downstream 191711 6982511 ~ 6982714 (+) True G119750
CI01000021_06773262_06780081.mRNA mRNA upstream 6780 6773262 ~ 6780081 (+) True CI01000021_06773262_06780081
CI01000021_06746518_06768316.mRNA mRNA upstream 18521 6746518 ~ 6768340 (+) False CI01000021_06746518_06768316
CI01000021_06427686_06431101.mRNA mRNA upstream 355108 6427686 ~ 6431753 (+) True CI01000021_06427686_06431101
CI01000021_06423446_06426296.mRNA mRNA upstream 359253 6423446 ~ 6427608 (+) True CI01000021_06423446_06426296
CI01000021_06411964_06421511.mRNA mRNA upstream 365350 6411964 ~ 6421511 (+) True CI01000021_06411964_06421511
CI01000021_06798250_06824148.mRNA mRNA downstream 7450 6798250 ~ 6824486 (+) True CI01000021_06798250_06824148
CI01000021_06906415_06933563.mRNA mRNA downstream 115615 6906415 ~ 6934141 (+) True CI01000021_06906415_06933563
CI01000021_06938981_06939825.mRNA mRNA downstream 148021 6938821 ~ 6939825 (+) True CI01000021_06938981_06939825
CI01000021_06941580_06949099.mRNA mRNA downstream 150780 6941580 ~ 6949099 (+) True CI01000021_06941580_06949099
TU134547 other upstream 1897353 4842733 ~ 4886292 (+) True G118432
TU133514 other upstream 2751185 4033000 ~ 4035676 (+) True G117493
TU133500 other upstream 2829109 3956146 ~ 3957752 (+) True G117484
TU133183 other upstream 3458628 3269144 ~ 3328233 (+) False G117202
TU135922 other downstream 9344 6800144 ~ 6860606 (+) True G119701

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042548 True 1641 mRNA 0.49 2 NC_007134.7 2185397 ~ 2189062 (+)