RNA id: CI01000024_07604312_07619531.mRNA


Basic Information

Item Value
RNA id CI01000024_07604312_07619531.mRNA
length 666
RNA type mRNA
GC content 0.49
exon number 5
gene id CI01000024_07604312_07619531
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 7604312 ~ 7619531 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCTTAGTTGTAAGAAGTGTATTATTATTGGCAACGGAGGCATTCTCTACAATAAGTCCTTGGGCTCCAGAATTGATCAATATGATGTTGTTGTACGACTAAACGAGGCTCCAGTCGCCGGTTTCGAGAAGGACGTGGGCTCGAAGACCACTATGCGCATCACCTACCCTGAAGGAGCCATCCAGAAACCAGAGCGCTACGAAAAGAGCTCACTTTTTGTTGTCTCTGCCTTTAAACCCATGGACTTCAAATGGCTGCGTCACATGGTGTTCAAGGACAAGCTTCGGAGTATGGAGGGATTCTGGAAGTCCGTGGCACGTTTCGTTCCCAGAGATCCAGAAGACATGCGGATCCTGAACCCGTATTTCATCCAGGAAGCGGCCTTCAGATTCATCGGGCTTCCACATAACAAAGGCCTCATGGGAAGAGGGAATATTCCCACACTGGGGACTGTTGCAATCACAATGGCCCTCCATAACTGCGATGAGGTGGCGGTGGCTGGATTCGGATATGACATGAATTCACCTCATGCACCTCTGCACTATTACGAGAAGCTCAAGATGTCTGCAATCAAAGAGTCATGGACACACAACATATCCAAAGAGAAGGAGTTTCTCCGGAAGCTGGTGATGGGGGGCGTTATTAAGGACCTGACCAATGGGATC

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K00781 SIAT6; neolactotetraosylceramide alpha-2,3-sialyltransferase (sialyltransferase 6)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142756 lncRNA downstream 1141 7602349 ~ 7603171 (-) True G125721
TU142761 lncRNA downstream 58887 7514304 ~ 7545425 (-) True G125725
TU142769 lncRNA downstream 64699 7537657 ~ 7539613 (-) True G125732
TU142724 lncRNA downstream 90341 7513650 ~ 7513971 (-) True G125716
TU142512 lncRNA downstream 91184 7512878 ~ 7513128 (-) True G125523
TU142800 lncRNA upstream 42889 7662420 ~ 7662630 (-) True G125760
TU142801 lncRNA upstream 44919 7664450 ~ 7664658 (-) True G125761
TU142803 lncRNA upstream 47385 7666916 ~ 7667192 (-) True G125763
TU142762 lncRNA upstream 183042 7802573 ~ 7817487 (-) True G125726
TU142743 lncRNA upstream 258518 7949030 ~ 7949387 (-) True G125718
CI01000024_07566408_07567250.mRNA mRNA downstream 37062 7566278 ~ 7567250 (-) True CI01000024_07566408_07567250
CI01000024_07549529_07561249.mRNA mRNA downstream 43063 7549515 ~ 7561249 (-) True CI01000024_07549529_07561249
CI01000024_07533115_07535965.mRNA mRNA downstream 67922 7532364 ~ 7536390 (-) True CI01000024_07533115_07535965
CI01000024_07433804_07468501.mRNA mRNA downstream 135811 7433470 ~ 7468501 (-) True CI01000024_07433804_07468501
CI01000024_07424110_07430994.mRNA mRNA downstream 173318 7423927 ~ 7430994 (-) True CI01000024_07424110_07430994
CI01000024_07672858_07695341.mRNA mRNA upstream 53062 7672593 ~ 7695825 (-) True CI01000024_07672858_07695341
CI01000024_07697986_07832289.mRNA mRNA upstream 78455 7697986 ~ 7832289 (-) True CI01000024_07697986_07832289
CI01000024_07847824_07855700.mRNA mRNA upstream 228042 7847573 ~ 7856341 (-) True CI01000024_07847824_07855700
CI01000024_07858315_07901816.mRNA mRNA upstream 238626 7858157 ~ 7901938 (-) False CI01000024_07858315_07901816
CI01000024_08161023_08259943.mRNA mRNA upstream 540759 8160290 ~ 8259943 (-) True CI01000024_08161023_08259943
TU142437 other downstream 246208 7357705 ~ 7358104 (-) False G125457
TU142439 other downstream 246208 7357754 ~ 7358104 (-) True G125457
TU142441 other downstream 246717 7357237 ~ 7357595 (-) False G125457
TU140468 other downstream 3662388 3936042 ~ 3937057 (-) True G123701
TU139935 other downstream 5049276 2547460 ~ 2555036 (-) True G123233
TU142839 other upstream 356136 7975667 ~ 7976047 (-) False G125798

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062256 False 1119 mRNA 0.46 11 NC_007117.7 3343834 ~ 3404907 (+)