RNA id: TU141835


Basic Information

Item Value
RNA id TU141835
length 348
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G124946
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 6663799 ~ 6664146 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGACTTTCAGCAGTCATTACCCCAGTCTTCAGTATCACATGATCCTTCCAAAATGATACTCTAAATTTTGAAATGAGGTAACAAATATTAGAAATATATAGAAATATTGTAGAATGAGGCAACATGTTGCCATATTCAAATAAAGGTTTTAAAATGTACGCTAAGTGTCACTAATTTAACTAGTATATGTTCAGCTAATTGTCAGCCTCTTACATGTCTGCGTCTCGAGAGAATGCAGAATTCAAGCGACAAATGATGTTTTATAAACAAAGTTTGGGAGGAGCACATTCAAATGGTCTATCTAATCAGCTCACGAGGAGGTATATATACACAGACAAGAACCAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141834 lncRNA downstream 2683 6660879 ~ 6661116 (-) True G124945
TU141820 lncRNA downstream 26292 6637273 ~ 6637507 (-) True G124931
TU141810 lncRNA downstream 42796 6620732 ~ 6621003 (-) True G124921
TU141806 lncRNA downstream 54513 6609029 ~ 6609286 (-) True G124917
TU141742 lncRNA downstream 161264 6502208 ~ 6502535 (-) True G124853
TU141850 lncRNA upstream 29304 6693450 ~ 6693721 (-) True G124961
TU141854 lncRNA upstream 32397 6696543 ~ 6696773 (-) True G124965
TU141870 lncRNA upstream 51762 6715908 ~ 6716180 (-) True G124980
TU141902 lncRNA upstream 88769 6752915 ~ 6753141 (-) True G125011
TU141911 lncRNA upstream 97109 6761255 ~ 6761888 (-) True G125020
CI01000024_06451305_06495178.mRNA mRNA downstream 165369 6451112 ~ 6498430 (-) False CI01000024_06451305_06495178
CI01000024_05986174_06002425.mRNA mRNA downstream 660990 5985732 ~ 6002809 (-) True CI01000024_05986174_06002425
CI01000024_05879244_05880952.mRNA mRNA downstream 782485 5878709 ~ 5881314 (-) True CI01000024_05879244_05880952
CI01000024_05749044_05807817.mRNA mRNA downstream 855718 5748897 ~ 5808081 (-) True CI01000024_05749044_05807817
CI01000024_05422777_05445492.mRNA mRNA downstream 1218307 5422777 ~ 5445492 (-) True CI01000024_05422777_05445492
CI01000024_06867041_06878399.mRNA mRNA upstream 202895 6867041 ~ 6878813 (-) True CI01000024_06867041_06878399
CI01000024_06889558_06901776.mRNA mRNA upstream 225301 6889447 ~ 6902501 (-) True CI01000024_06889558_06901776
CI01000024_06909681_06921880.mRNA mRNA upstream 245176 6909322 ~ 6921880 (-) True CI01000024_06909681_06921880
CI01000024_06944906_06955771.mRNA mRNA upstream 279816 6943962 ~ 6955771 (-) True CI01000024_06944906_06955771
CI01000024_06987928_07001260.mRNA mRNA upstream 323310 6987456 ~ 7001358 (-) True CI01000024_06987928_07001260
TU140468 other downstream 2721875 3936042 ~ 3937057 (-) True G123701
TU139935 other downstream 4108763 2547460 ~ 2555036 (-) True G123233
TU137850 other downstream 5836948 823733 ~ 826851 (-) True G121380
TU142441 other upstream 693091 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 693559 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 693608 7357754 ~ 7358104 (-) True G125457
TU142839 other upstream 1311521 7975667 ~ 7976047 (-) False G125798

Expression Profile