RNA id: TU142263


Basic Information

Item Value
RNA id TU142263
length 704
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G125309
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 6764188 ~ 6764891 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NNNNNTGTATTGGACAGGTGATGAGCAGTGCCTGGTTTTCTCCACACATACCGCTTAGAATTAAGGCCAAAAAGTTCTATCTTGGTCTCATCAGACCAGAGAATCTTATTTCTCACCATCTTGGAGTCCTTCAGGTGTTTTTTCATGTGTCTTGCACTGAGGAGAGGCTTCCGTCGGGCCACTCTGCCATAAAGCCCCGACTGGTGGAGGGCTGCAGTGATGGTTGACTTTCTACAACTTTCTCCCATCTCCTGACTGCATCTCTGGAGCTCAGCCACAGTGACCTTTGGGTTCTTCTTTACCTCTCTCACCAAGGCTCTTCTCCCCCGATAGCTCAGTTTGGCCGGACAGCCAGCTCTAGGAAGGGTTCTGGTCATCCCAAACGTCTTCCATTTAAGGATTATGGAGGCCACCGTGCTCTTAGGAACCTTAAGTGCAGCAGAATTTTTTTTGTAACCTTGGCCAGATCTGTGCCTTGCCACAGTTCTGTCTCTGAGCTCCTCAGGCAGTTCCTTTGACCTCATGATTCTCATTTGCTCTGACATGCACTGTGAGCTGTAAGGTCTTATATAGACAGGTGTGTGGCTTTCCTAATCAAGTCCAATCAGTATAATCAAACGCAGCTGGACTCAAATGAAGGTGTAGAACCATCTCAAGGATGATCAGAAGAAATGGACAGCACCTGAGTTAAATATATGAGTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141911 lncRNA downstream 2300 6761255 ~ 6761888 (-) True G125020
TU141902 lncRNA downstream 11047 6752915 ~ 6753141 (-) True G125011
TU141870 lncRNA downstream 48008 6715908 ~ 6716180 (-) True G124980
TU141854 lncRNA downstream 67415 6696543 ~ 6696773 (-) True G124965
TU141850 lncRNA downstream 70467 6693450 ~ 6693721 (-) True G124961
TU142266 lncRNA upstream 11561 6776452 ~ 6776668 (-) True G125312
TU142305 lncRNA upstream 87709 6852600 ~ 6852895 (-) True G125344
TU142309 lncRNA upstream 116856 6881747 ~ 6881995 (-) True G125348
TU142274 lncRNA upstream 120271 6885162 ~ 6888157 (-) True G125315
TU142316 lncRNA upstream 200459 6965350 ~ 6965589 (-) True G125355
CI01000024_06451305_06495178.mRNA mRNA downstream 265758 6451112 ~ 6498430 (-) False CI01000024_06451305_06495178
CI01000024_05986174_06002425.mRNA mRNA downstream 761379 5985732 ~ 6002809 (-) True CI01000024_05986174_06002425
CI01000024_05879244_05880952.mRNA mRNA downstream 882874 5878709 ~ 5881314 (-) True CI01000024_05879244_05880952
CI01000024_05749044_05807817.mRNA mRNA downstream 956107 5748897 ~ 5808081 (-) True CI01000024_05749044_05807817
CI01000024_05422777_05445492.mRNA mRNA downstream 1318696 5422777 ~ 5445492 (-) True CI01000024_05422777_05445492
CI01000024_06867041_06878399.mRNA mRNA upstream 102150 6867041 ~ 6878813 (-) True CI01000024_06867041_06878399
CI01000024_06889558_06901776.mRNA mRNA upstream 124556 6889447 ~ 6902501 (-) True CI01000024_06889558_06901776
CI01000024_06909681_06921880.mRNA mRNA upstream 144431 6909322 ~ 6921880 (-) True CI01000024_06909681_06921880
CI01000024_06944906_06955771.mRNA mRNA upstream 179071 6943962 ~ 6955771 (-) True CI01000024_06944906_06955771
CI01000024_06987928_07001260.mRNA mRNA upstream 222565 6987456 ~ 7001358 (-) True CI01000024_06987928_07001260
TU140468 other downstream 2822264 3936042 ~ 3937057 (-) True G123701
TU139935 other downstream 4209152 2547460 ~ 2555036 (-) True G123233
TU137850 other downstream 5937337 823733 ~ 826851 (-) True G121380
TU142441 other upstream 592346 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 592814 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 592863 7357754 ~ 7358104 (-) True G125457
TU142839 other upstream 1210776 7975667 ~ 7976047 (-) False G125798

Expression Profile