RNA id: CI01000026_12094316_12125431.mRNA


Basic Information

Item Value
RNA id CI01000026_12094316_12125431.mRNA
length 2423
RNA type mRNA
GC content 0.41
exon number 17
gene id CI01000026_12094316_12125431
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12094316 ~ 12126264 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTGCTTCCTCCTGTTTGCAGTACTGTACATTGTGTCATACTGCGTCATCTCACGCTACAAGAGGAAAAGCGATGACCAGGAAGATGAGGATGCCATTGTCAACAGAATATCTAATGAGATCCTGTTGTCCCTTCCAAAAAACTACTACATACAATGGCTGAATGGATCACTCATTCATGGCCTGTGGAACCTGGTGTCCCTCTTCTCAAATCTCTGTCTCTTTGTGCTGATGCCTTTTGCCTATTTCTTCCTGGAGTCTGAGGGCTTTGCTGGTTCGAAAAAGGGCATAAGGGCTCGAGTGCTGGAGACATTTGTTATGCTCTTTCTGCTGGGTCTCCTCATTCTGGGCATTGTATGGGTGGCATCCGCTCTCATCGACAATGATGCGGCCAGCATGGAATCGCTCTACGATTTATGGGAGTTTTATCTGCCGTACCTCTACTCCTGCATCTCTCTGATGGGTGGCCTATTGCTGCTTAGTAAGTTCACAGGAAACAATGCTGTCAGTGGAGTCTATGCACAATCGCTTCCTCATTTGGCCTCAGTAGCTTCCGTGTGTACTCCAGTGGGAATGTCACGCATGTTCACAGTGATGGGTCAGTTACTAGTCAAACCCACAATATTAGAGGATCTGGATGAGCAGATTTATTGTATACAGCTGCAGGAAGAGGCCCTGGAGCGTAGACTCAATGATGCGCAGTGGCAGGGTGACCTTGCAAAAACTCTCCTCGGTATGATGTCAAACTCTTATCTCCATGGAAACTCTCAGCACCATCTCTACAAAGAGCTGGACAACATTCGTAATCAGAGGAACAAACTCGAAAGGAGAAAGAAGGCCTCAGCCTGGGAAAAGAACCTCCTTTACCCCATAGTGATGATGATCCTTCTTGCTGGAACGGCGATTTCTGTTCTTCTGGTTGCTCTGAACATTGTGTACTTGCTTGTTGATGAGACGGCTATGCCAAAGGGTTCAACGACCTCATTTGTCTTAACTGGGTGTTTTGAGTACTTGACCGAAGTCCTTTCAGCCAAAACTGCTGCAATGAAACCATCATTTAACCTTTGTGCAGTTGTGCACTGTGTGAAGACAGTGTCAGTTTTCTCTTTTGACAAGGTAATTACAAGCTACGGCTGGTTAAATTTGAGTCCAAGTCAGTTTACCACTCATTTGAGCTCGGACAGTTATCTGATGGTCTCCTCTGTGGTTGGCTTTTATAGCCTTCGCATCTTTCAGGAGCTCACTCCCAGAAAGGATGACACAACCATGACAACGATCATTGGTTGCTGTGTATCTATTCTAGTGCTGAGCTCGGCCTTGCCTGTCATGTCCCGAACACTTGGAATAACAAGGTTTGATCTCCTGGGTGATTTCGGACGATTTAATTGGCTTGGAAATTTTTACATTGTACTTTCGTACAATCTTCTGTTTGCTGTGGTAACCACATTGTGTCTGGTCCGAAAATTCACGTCTGCCGTGCGAGAGGAACTCCTCAAAGCCCTCGGTCTGGATAAATTGAATCTGTCAAACAGCACAACGGATGCAGAGTCAGGGAAACATGCTGTCAACGGGCATCAGAAAACTCTGTGAGAGAAAAATCATCAGGACATTCTCACACAAACACGTGTATGTGTATACAGTTGTCTTTTTCATTTTAATAGTATAGTAATATACAGTCAGGGAGCATCAAAGGCTAAAAAAAAATAGAAAAGGGATAATAATTAGGAATAGATGTTAATGCGAGATGCTTCTAGTGTCAGTTGAAGTGTTTAGACTCTGTGTCTCCTGACGTGTAGAATATGTCCATCACCTCATCTGAGCAGTCAATGGCACTGAAACTCACTGCAGAATGCTTCCATCTGAAACAAGTCTCAGATTCACAGTGATTTCATTTTGGTTATCAATGTTTGTTGTTCAGTTTGTAAATACTTTCATTTCAAATGAGAAATTTTATTCTTTTTGATGACCTGCACATCTAAAAGTCCTCTTGACAGCATCCTTCAATGGAGGATTATTATTATTATTATTATCTATACTTTCTCTTTGATTAGTTGAAATATTAAGCTGTTTGCCAAGCTGATTGAATTTCACGTGCATAGGGCATATAATTTTCCTCTTAAATTATTGTAGATTTTGTGCCCTTGTTGATCAGTATTTTGTAAAGTTAAATGGAATTTCTAAACAAGTTTAGGCCACAAGAGCAGTTCACGTAAAAACAGCACACACATGAAATATAAACTTTTTTTGATATTGACACGAGAGACACCATTATTACATGTAATCTTAGAACTAATATTAGAAACTATATTCCCTTAAGAATTGCAGAGCTTTGAAATTTGCACTGGGAAAGAAATTGCTGCAGTGAGTGTAACTTAACATTTATATAGTTTCAAATGTTTTAATACCAAATTGACTGATTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152532 lncRNA upstream 61910 12005870 ~ 12032406 (+) False G134120
TU152533 lncRNA upstream 61910 12026411 ~ 12032406 (+) True G134120
TU152560 lncRNA upstream 180884 11912221 ~ 11913432 (+) True G134145
TU152555 lncRNA upstream 202714 11861568 ~ 11891602 (+) False G134141
TU152613 lncRNA downstream 17245 12143509 ~ 12143787 (+) True G134197
TU152617 lncRNA downstream 24255 12150519 ~ 12150775 (+) True G134201
TU152631 lncRNA downstream 68920 12195184 ~ 12195417 (+) True G134215
TU152633 lncRNA downstream 70237 12196501 ~ 12196758 (+) True G134217
TU152634 lncRNA downstream 70826 12197090 ~ 12197300 (+) True G134218
CI01000026_12074163_12076475.mRNA mRNA upstream 16776 12073813 ~ 12077540 (+) True CI01000026_12074163_12076475
CI01000026_11862091_11976290.mRNA mRNA upstream 118026 11862091 ~ 11976290 (+) True CI01000026_11862091_11976290
CI01000026_11809092_11810238.mRNA mRNA upstream 283905 11808462 ~ 11810411 (+) True CI01000026_11809092_11810238
CI01000026_11792044_11807684.mRNA mRNA upstream 286042 11792044 ~ 11808274 (+) True CI01000026_11792044_11807684
CI01000026_11756587_11788914.mRNA mRNA upstream 305244 11756587 ~ 11789072 (+) True CI01000026_11756587_11788914
CI01000026_12192269_12200366.mRNA mRNA downstream 65388 12191652 ~ 12200734 (+) True CI01000026_12192269_12200366
CI01000026_12203244_12209526.mRNA mRNA downstream 75094 12201358 ~ 12209698 (+) True CI01000026_12203244_12209526
CI01000026_12425699_12438163.mRNA mRNA downstream 297815 12424079 ~ 12438621 (+) True CI01000026_12425699_12438163
CI01000026_12486292_12534245.mRNA mRNA downstream 359622 12485886 ~ 12534327 (+) True CI01000026_12486292_12534245
CI01000026_12551009_12554565.mRNA mRNA downstream 424745 12551009 ~ 12554565 (+) False CI01000026_12551009_12554565
TU151829 other upstream 617409 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 839243 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 1015236 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 1932355 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 2525156 9568739 ~ 9569160 (+) False G132667

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066483 True 1596 mRNA 0.46 18 NC_007118.7 40658003 ~ 40708140 (+)