RNA id: CI01000026_12706512_12707086.mRNA



Basic Information


Item Value
RNA id CI01000026_12706512_12707086.mRNA
length 1684
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000026_12706512_12707086
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12705293 ~ 12707152 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACATAAAAGGCGCAGCGCCAGCTCTCATACAAATCAGCACGGACAGCAGAGTCAGACTGGTCAACGTGAGTGGCCCTGCATGTTCAGGCAGTGGCAGTGTACGTTCCAGCAGTGCATCCGAGCAGAAGCGATGCAGCAGTTACAGAGAATTCCAGCTTCTTTCATCTCACCAGAGATAAAAAGCTTGTGTATAGCACAACTACTGAATACTCTTCATTCATTATTCTGGTGATTCACTCAGCAAGCACCTGAGACTGATATAGGAGTGGTGACAAATTTGGGAGGGAACGGCAACTAAGATCACAAATGCTTTGTCACAATATTATTTTGAAGAAGGCAATAGAACATGCTACAGGAAAACAGACGTTTTTTAAGTCCGTGCCATATTATAATATGTTACCTCCAGCTCTTTCTTGGTGTAAGTGAACAGACATTGACGTTAGGGTCACTCCACTCATATAAGAAACCGCTAAATTATGATGGAGCATTATAATATTAGTCCTGCTGGGGAAGAGGAAAGCAGCACATCTTAATAACTAGGTTACCAAAGACTGGAAAGCAGAATGCATTCAATGTAATCGCACTGTAATGTAATGTAACGTAACTGCACCAGGTGAAAATACAAAATTTAGAATTCAGAGACTATAAATCTGTGTAGGAGCATTAGATAATATCATATACGTATAACAATGTACTATACAGTGTTGTAACCAGCACTCAAAGACTTTTTTCACCAAATATTTTTTAGTGATTTCTAGAAAAAGATTTCAGAGAATGCATTCACAAAGAACTATTTATATTATTAGAAAATGTTGTTATATACAATACTTCCAAATCTATGCCTTTTCCAGGCCTGAAAATCACAGTTTTAAAGACCCTGACATTTCAAGGTTTCCATCACTGCAGGAACCTTTACAGAGAAAACGACTGGAGCTTAAAAAAAAACACAAAAACTAACTTGGTGAAGAAAAAAATAATGCTGACAGTGTCTGTATACGCATCGCAAAGCTGCTTCAGTTATATTTCTAAGATAAATCCACCTACATATACGTACCTATGATAAATCACATTCCAATACTTAAAAACAAACTGACTTCACATTGACTATATGAGTGAATCTTGAGGAAAGGTATCTTTATGTTGCTAGTAACACTTTCAATTACCTCTCACTTTCAAGTGAGAGGTAATTAGGCTCTTTACAGAGTACTGGGGGCATCTGATGTCTCATAACATCCCCACTACAGCCTTACGTGCTGCTTTAAACCTCTCACTCCAGAGAGTCAGCATTAAGATCGCTCCATCCGAACTGAAGACCAGTGATGGAGAAGACAGGATTAACACGTGCACCAGTGTGCGCGCTCGCGCGCATTCAGGACCAGTTCGTGTGTACTGTCTGGCTTCATATAGTCTCTATCTGCTTTTTACATTGCCAAATAAACTAGATCCAATGGTTACTGTGGCCGGTTGGTCGCTAAAGGGCAGCGGACGACAGATGAAGAAGCGGATGAGGAGCGATGGAGATGAAGTTCTTTATAGCTTAAATCAGAAGCACACACTCCCTGTTGCTCGGTGCTGGAGTGACTGGACAGTCAGTGTGGAGAGAGAGGCAGCGGAGTGAGGAGGGGACGCAGCCAGAGACGGTGAGCGCTGAGGCGCAGGCGCGTCCTGTCCACCGCTGCTTCGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU152754 lncRNA upstream 71865 12633109 ~ 12633428 (+) True G134332
TU152748 lncRNA upstream 76919 12628018 ~ 12628374 (+) True G134326
TU152741 lncRNA upstream 77565 12625829 ~ 12627728 (+) True G134319
TU152784 lncRNA upstream 82578 12621919 ~ 12622715 (+) True G134359
TU152782 lncRNA upstream 83745 12619441 ~ 12621548 (+) True G134357
TU152747 lncRNA downstream 1814 12708966 ~ 12709598 (+) True G134325
TU152739 lncRNA downstream 11669 12718821 ~ 12736010 (+) True G134317
TU152723 lncRNA downstream 17227 12724379 ~ 12728852 (+) True G134301
TU153159 lncRNA downstream 81041 12788193 ~ 12788401 (+) True G134686
TU153161 lncRNA downstream 82058 12789210 ~ 12789624 (+) True G134688
CI01000026_12653232_12657339.mRNA mRNA upstream 47457 12653072 ~ 12657836 (+) True CI01000026_12653232_12657339
CI01000026_12582462_12589223.mRNA mRNA upstream 115736 12582304 ~ 12589557 (+) True CI01000026_12582462_12589223
CI01000026_12562467_12570436.mRNA mRNA upstream 134519 12562467 ~ 12570774 (+) True CI01000026_12562467_12570436
CI01000026_12558237_12560933.mRNA mRNA upstream 143675 12558237 ~ 12561618 (+) True CI01000026_12558237_12560933
CI01000026_12551009_12554565.mRNA mRNA upstream 150728 12551009 ~ 12554565 (+) False CI01000026_12551009_12554565
CI01000026_12867260_12871481.mRNA mRNA downstream 160059 12867211 ~ 12871720 (+) True CI01000026_12867260_12871481
CI01000026_12929788_12932668.mRNA mRNA downstream 222487 12929639 ~ 12933391 (+) True CI01000026_12929788_12932668
CI01000026_12966022_12977066.mRNA mRNA downstream 258444 12965596 ~ 12977588 (+) True CI01000026_12966022_12977066
CI01000026_13019100_13028307.mRNA mRNA downstream 310968 13018120 ~ 13029368 (+) True CI01000026_13019100_13028307
CI01000026_13218786_13290069.mRNA mRNA downstream 511634 13218786 ~ 13290154 (+) True CI01000026_13218786_13290069
TU151829 other upstream 1228386 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 1450220 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 1626213 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 2543332 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 3136133 9568739 ~ 9569160 (+) False G132667

Expression Profile