RNA id: TU152613


Basic Information

Item Value
RNA id TU152613
length 279
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G134197
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12143509 ~ 12143787 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAATTAAAGGGTTAGTTCACCCAAAAATTAAATTTCTGTCATTAAGTAGGCCTCCTCACCCTTGTGTTGTTCCAAACCGTTCATCTTTGGAACACAAATTAAGATATTTTTGATGATATCCAAGTTTTTTTTAATTCCCTATAGAAATCAACGTAATTGCTGTCATTCAAGGTCCAGAAAGGTATTAAAGACATTGTTAAAATGTCTGATTTCACATTGTTGTTTTGGGTGAACTAACCCTTTAAGGTTTTTGAGGAAAATATTCCAGGATTTTTCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152532 lncRNA upstream 111103 12005870 ~ 12032406 (+) False G134120
TU152533 lncRNA upstream 111103 12026411 ~ 12032406 (+) True G134120
TU152560 lncRNA upstream 230077 11912221 ~ 11913432 (+) True G134145
TU152555 lncRNA upstream 251907 11861568 ~ 11891602 (+) False G134141
TU152556 lncRNA upstream 251907 11861750 ~ 11891602 (+) True G134141
TU152617 lncRNA downstream 6732 12150519 ~ 12150775 (+) True G134201
TU152631 lncRNA downstream 51397 12195184 ~ 12195417 (+) True G134215
TU152633 lncRNA downstream 52714 12196501 ~ 12196758 (+) True G134217
TU152634 lncRNA downstream 53303 12197090 ~ 12197300 (+) True G134218
TU152654 lncRNA downstream 116160 12259947 ~ 12260177 (+) True G134238
CI01000026_12094316_12125431.mRNA mRNA upstream 17245 12094316 ~ 12126264 (+) True CI01000026_12094316_12125431
CI01000026_12074163_12076475.mRNA mRNA upstream 65969 12073813 ~ 12077540 (+) True CI01000026_12074163_12076475
CI01000026_11862091_11976290.mRNA mRNA upstream 167219 11862091 ~ 11976290 (+) True CI01000026_11862091_11976290
CI01000026_11809092_11810238.mRNA mRNA upstream 333098 11808462 ~ 11810411 (+) True CI01000026_11809092_11810238
CI01000026_11792044_11807684.mRNA mRNA upstream 335235 11792044 ~ 11808274 (+) True CI01000026_11792044_11807684
CI01000026_12192269_12200366.mRNA mRNA downstream 47865 12191652 ~ 12200734 (+) True CI01000026_12192269_12200366
CI01000026_12203244_12209526.mRNA mRNA downstream 57571 12201358 ~ 12209698 (+) True CI01000026_12203244_12209526
CI01000026_12425699_12438163.mRNA mRNA downstream 280292 12424079 ~ 12438621 (+) True CI01000026_12425699_12438163
CI01000026_12486292_12534245.mRNA mRNA downstream 342099 12485886 ~ 12534327 (+) True CI01000026_12486292_12534245
CI01000026_12551009_12554565.mRNA mRNA downstream 407222 12551009 ~ 12554565 (+) False CI01000026_12551009_12554565
TU151829 other upstream 666602 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 888436 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 1064429 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 1981548 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 2574349 9568739 ~ 9569160 (+) False G132667

Expression Profile