RNA id: TU152699


Basic Information

Item Value
RNA id TU152699
length 357
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G134282
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12409380 ~ 12409736 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTATATGTTTATGTTTGTATTTTTGCATTACTGAACGTTCTCTTGTAATACTTCTCTCCCTGTAATTTGATATGGTCAGGACCTATATATGTTGTGTAATGGTACACAAAAATGACGGTTCGGTACGTACCTCGGTTTTGAAGTCACGGTTCAGTACGGGTTCGGTACAGCAGGGTGAGAAAACAAAACAATTTTTTTCTCTTTTTTTTTTTATTAAACAGTGTTTTACTGAACCAACTGTGTCTCTGTCTTTAAATTTATTCAATTATAATTAAAATTTTCTTAAGGATAAAAAAATCTATCTCTGCTAATGCTGTAAACTATTAGGGAGCCCTTATTGCACCTTACTACTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152688 lncRNA upstream 13090 12395063 ~ 12396290 (+) True G134271
TU152679 lncRNA upstream 30687 12378426 ~ 12378693 (+) True G134262
TU152675 lncRNA upstream 33713 12375434 ~ 12375667 (+) True G134258
TU152673 lncRNA upstream 35142 12373578 ~ 12374238 (+) True G134256
TU152598 lncRNA upstream 79555 12326934 ~ 12329825 (+) True G134182
TU152751 lncRNA downstream 42180 12451916 ~ 12456462 (+) True G134329
TU152736 lncRNA downstream 46893 12456629 ~ 12481470 (+) True G134314
TU152767 lncRNA downstream 93526 12503262 ~ 12604181 (+) True G134345
TU152705 lncRNA downstream 137922 12547658 ~ 12557353 (+) False G134288
TU152706 lncRNA downstream 137922 12547658 ~ 12557425 (+) False G134288
CI01000026_12203244_12209526.mRNA mRNA upstream 199682 12201358 ~ 12209698 (+) True CI01000026_12203244_12209526
CI01000026_12192269_12200366.mRNA mRNA upstream 208646 12191652 ~ 12200734 (+) True CI01000026_12192269_12200366
CI01000026_12094316_12125431.mRNA mRNA upstream 283116 12094316 ~ 12126264 (+) True CI01000026_12094316_12125431
CI01000026_12074163_12076475.mRNA mRNA upstream 331840 12073813 ~ 12077540 (+) True CI01000026_12074163_12076475
CI01000026_11862091_11976290.mRNA mRNA upstream 433090 11862091 ~ 11976290 (+) True CI01000026_11862091_11976290
CI01000026_12425699_12438163.mRNA mRNA downstream 14343 12424079 ~ 12438621 (+) True CI01000026_12425699_12438163
CI01000026_12486292_12534245.mRNA mRNA downstream 76150 12485886 ~ 12534327 (+) True CI01000026_12486292_12534245
CI01000026_12551009_12554565.mRNA mRNA downstream 141273 12551009 ~ 12554565 (+) False CI01000026_12551009_12554565
CI01000026_12558237_12560933.mRNA mRNA downstream 148501 12558237 ~ 12561618 (+) True CI01000026_12558237_12560933
CI01000026_12562467_12570436.mRNA mRNA downstream 152731 12562467 ~ 12570774 (+) True CI01000026_12562467_12570436
TU151829 other upstream 932473 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 1154307 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 1330300 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 2247419 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 2840220 9568739 ~ 9569160 (+) False G132667

Expression Profile