RNA id: TU152767


Basic Information

Item Value
RNA id TU152767
length 255
lncRNA type read_through
GC content 0.34
exon number 2
gene id G134345
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12503262 ~ 12604181 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGAACTGTTTCTTGAGCAGCAAATCAGCAAATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGCCATCACAGAATTTCTTTTCTGAAGACATTTTTGATAAAATATATGTAGCCTTGGTGACTACAAAAAAATCTTACCGACCCCAAAAGTTTGAATGGTAGAGTACATTTAATTCGTTATGAAACAGTAAATGCAAAACCTATTCAACTGTAAAACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152736 lncRNA upstream 21792 12456629 ~ 12481470 (+) True G134314
TU152751 lncRNA upstream 46800 12451916 ~ 12456462 (+) True G134329
TU152699 lncRNA upstream 93526 12409380 ~ 12409736 (+) True G134282
TU152688 lncRNA upstream 106972 12395063 ~ 12396290 (+) True G134271
TU152679 lncRNA upstream 124569 12378426 ~ 12378693 (+) True G134262
TU152771 lncRNA downstream 419 12604600 ~ 12605365 (+) True G134348
TU152773 lncRNA downstream 5085 12609266 ~ 12609676 (+) True G134350
TU152781 lncRNA downstream 12774 12616955 ~ 12617540 (+) True G134356
TU152782 lncRNA downstream 15260 12619441 ~ 12621548 (+) True G134357
TU152784 lncRNA downstream 17738 12621919 ~ 12622715 (+) True G134359
CI01000026_12425699_12438163.mRNA mRNA upstream 64641 12424079 ~ 12438621 (+) True CI01000026_12425699_12438163
CI01000026_12203244_12209526.mRNA mRNA upstream 293564 12201358 ~ 12209698 (+) True CI01000026_12203244_12209526
CI01000026_12192269_12200366.mRNA mRNA upstream 302528 12191652 ~ 12200734 (+) True CI01000026_12192269_12200366
CI01000026_12094316_12125431.mRNA mRNA upstream 376998 12094316 ~ 12126264 (+) True CI01000026_12094316_12125431
CI01000026_12074163_12076475.mRNA mRNA upstream 425722 12073813 ~ 12077540 (+) True CI01000026_12074163_12076475
CI01000026_12653232_12657339.mRNA mRNA downstream 48891 12653072 ~ 12657836 (+) True CI01000026_12653232_12657339
CI01000026_12706512_12707086.mRNA mRNA downstream 101112 12705293 ~ 12707152 (+) True CI01000026_12706512_12707086
CI01000026_12867260_12871481.mRNA mRNA downstream 263030 12867211 ~ 12871720 (+) True CI01000026_12867260_12871481
CI01000026_12929788_12932668.mRNA mRNA downstream 325458 12929639 ~ 12933391 (+) True CI01000026_12929788_12932668
CI01000026_12966022_12977066.mRNA mRNA downstream 361415 12965596 ~ 12977588 (+) True CI01000026_12966022_12977066
TU151829 other upstream 1026355 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 1248189 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 1424182 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 2341301 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 2934102 9568739 ~ 9569160 (+) False G132667

Expression Profile