Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU152728 |
| length | 984 |
| lncRNA type | antisense_over |
| GC content | 0.50 |
| exon number | 4 |
| gene id | G134306 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 12595796 ~ 12597699 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU152706 | lncRNA | upstream | 38371 | 12547658 ~ 12557425 (+) | False | G134288 |
| TU152708 | lncRNA | upstream | 38371 | 12547658 ~ 12557425 (+) | True | G134288 |
| TU152705 | lncRNA | upstream | 38443 | 12547658 ~ 12557353 (+) | False | G134288 |
| TU152707 | lncRNA | upstream | 38443 | 12547658 ~ 12557353 (+) | False | G134288 |
| TU152736 | lncRNA | upstream | 114326 | 12456629 ~ 12481470 (+) | True | G134314 |
| TU152771 | lncRNA | downstream | 6901 | 12604600 ~ 12605365 (+) | True | G134348 |
| TU152773 | lncRNA | downstream | 11567 | 12609266 ~ 12609676 (+) | True | G134350 |
| TU152781 | lncRNA | downstream | 19256 | 12616955 ~ 12617540 (+) | True | G134356 |
| TU152782 | lncRNA | downstream | 21742 | 12619441 ~ 12621548 (+) | True | G134357 |
| TU152784 | lncRNA | downstream | 24220 | 12621919 ~ 12622715 (+) | True | G134359 |
| CI01000026_12582462_12589223.mRNA | mRNA | upstream | 6239 | 12582304 ~ 12589557 (+) | True | CI01000026_12582462_12589223 |
| CI01000026_12562467_12570436.mRNA | mRNA | upstream | 25022 | 12562467 ~ 12570774 (+) | True | CI01000026_12562467_12570436 |
| CI01000026_12558237_12560933.mRNA | mRNA | upstream | 34178 | 12558237 ~ 12561618 (+) | True | CI01000026_12558237_12560933 |
| CI01000026_12551009_12554565.mRNA | mRNA | upstream | 41231 | 12551009 ~ 12554565 (+) | False | CI01000026_12551009_12554565 |
| CI01000026_12486292_12534245.mRNA | mRNA | upstream | 61469 | 12485886 ~ 12534327 (+) | True | CI01000026_12486292_12534245 |
| CI01000026_12653232_12657339.mRNA | mRNA | downstream | 55373 | 12653072 ~ 12657836 (+) | True | CI01000026_12653232_12657339 |
| CI01000026_12706512_12707086.mRNA | mRNA | downstream | 107594 | 12705293 ~ 12707152 (+) | True | CI01000026_12706512_12707086 |
| CI01000026_12867260_12871481.mRNA | mRNA | downstream | 269512 | 12867211 ~ 12871720 (+) | True | CI01000026_12867260_12871481 |
| CI01000026_12929788_12932668.mRNA | mRNA | downstream | 331940 | 12929639 ~ 12933391 (+) | True | CI01000026_12929788_12932668 |
| CI01000026_12966022_12977066.mRNA | mRNA | downstream | 367897 | 12965596 ~ 12977588 (+) | True | CI01000026_12966022_12977066 |
| TU151829 | other | upstream | 1118889 | 11476117 ~ 11476907 (+) | False | G133542 |
| TU151777 | other | upstream | 1340723 | 11244933 ~ 11255073 (+) | True | G133497 |
| TU151694 | other | upstream | 1516716 | 11070768 ~ 11070876 (+) | True | G133429 |
| TU151441 | other | upstream | 2433835 | 10159819 ~ 10161961 (+) | True | G133192 |
| TU150881 | other | upstream | 3026636 | 9568739 ~ 9569160 (+) | False | G132667 |
