RNA id: TU152784


Basic Information

Item Value
RNA id TU152784
length 365
lncRNA type antisense_over
GC content 0.42
exon number 5
gene id G134359
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12621919 ~ 12622715 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCACAAGAGTGGCCACCTGTTTTAGGAAAGACTCTAGTGCTGTGTAACTACTCTTTTTCAGCTCTCCATTTATATGTCCACAAAGTTTGGACATGACATCAAAGATAGACATGTAATGATCCATGAGACAATTGCCAAACTGGCTTGAGTGCTTAGCAAACAGTTTGAGACCGGCAAAGATGACTGCATATCTTTTCATATCAGTCTGTGGACAAATCGCCTTTAGCGCATAATTAAAGATTTCTTTTGACATAACCGGGTCTTCTTCCATTGATTTGGTGAAGTTCACCATCAGAGCGGTGATTCCTTTCAGGCAGCCAGCAACAAGAGGAAGTTTTGGTTCCTTTGTAGTAGATGTCATCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152782 lncRNA upstream 371 12619441 ~ 12621548 (+) True G134357
TU152781 lncRNA upstream 4379 12616955 ~ 12617540 (+) True G134356
TU152773 lncRNA upstream 12243 12609266 ~ 12609676 (+) True G134350
TU152771 lncRNA upstream 16554 12604600 ~ 12605365 (+) True G134348
TU152728 lncRNA upstream 24220 12595796 ~ 12597699 (+) True G134306
TU152741 lncRNA downstream 3114 12625829 ~ 12627728 (+) True G134319
TU152748 lncRNA downstream 5303 12628018 ~ 12628374 (+) True G134326
TU152754 lncRNA downstream 10394 12633109 ~ 12633428 (+) True G134332
TU152747 lncRNA downstream 86251 12708966 ~ 12709598 (+) True G134325
TU152739 lncRNA downstream 96106 12718821 ~ 12736010 (+) True G134317
CI01000026_12582462_12589223.mRNA mRNA upstream 32362 12582304 ~ 12589557 (+) True CI01000026_12582462_12589223
CI01000026_12562467_12570436.mRNA mRNA upstream 51145 12562467 ~ 12570774 (+) True CI01000026_12562467_12570436
CI01000026_12558237_12560933.mRNA mRNA upstream 60301 12558237 ~ 12561618 (+) True CI01000026_12558237_12560933
CI01000026_12551009_12554565.mRNA mRNA upstream 67354 12551009 ~ 12554565 (+) False CI01000026_12551009_12554565
CI01000026_12486292_12534245.mRNA mRNA upstream 87592 12485886 ~ 12534327 (+) True CI01000026_12486292_12534245
CI01000026_12653232_12657339.mRNA mRNA downstream 30357 12653072 ~ 12657836 (+) True CI01000026_12653232_12657339
CI01000026_12706512_12707086.mRNA mRNA downstream 82578 12705293 ~ 12707152 (+) True CI01000026_12706512_12707086
CI01000026_12867260_12871481.mRNA mRNA downstream 244496 12867211 ~ 12871720 (+) True CI01000026_12867260_12871481
CI01000026_12929788_12932668.mRNA mRNA downstream 306924 12929639 ~ 12933391 (+) True CI01000026_12929788_12932668
CI01000026_12966022_12977066.mRNA mRNA downstream 342881 12965596 ~ 12977588 (+) True CI01000026_12966022_12977066
TU151829 other upstream 1145012 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 1366846 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 1542839 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 2459958 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 3052759 9568739 ~ 9569160 (+) False G132667

Expression Profile