RNA id: TU152741



Basic Information


Item Value
RNA id TU152741
length 1900
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G134319
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12625829 ~ 12627728 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGACCAAAGCTCTTATAAATGTAAACATTCAAGCGCCAAAAGATGCGCAAGAGAATTCAATTTGCTGTTTTCTGTGCATTTAGAGCTGCATCTCAGCACCGAATTGAGTTCTCTTTCGCGACTTCTTTCTAAAAATGTCTTGTTGAGTATTCACGTAAACAGTCGGTTTTGTCTTAAGTGAACGTAAACAAAAAAATCGGTTGTGCTTAAAAATCGGTCTTAAAGTGACAGCAAAATGTTAATGAAACAACTAAAAAGACAGAAAATCACTCACTGCTCTTGAATGAATAACTTTTGTAGCTTTAACAGGGAATAATCTGTATTTAATTTATAGGGTGAAGATTACAGAGTTATTTAACATTTTATTATTCAATTTCTGTACTTGAATAGGCCTACTGTTAAACCTATCTGAACATCTTAATGCCATGTTTATTTCATTTATTTCTTCTTTGTTCTATTGTAGCCTATATTTGTGTTATTGTTTGTAATTAGTTTATTTGTTTGTTTGTTTTTATTACTGATCGTTTACCTTTTTTTAATAATGTTTGAACCTTACAGTTAGGCTAAAGTTTTTTGGCTACAGTTTTGCTGTGGTATCGAAAATTTTACTGGTAGGCCTATCTTAAATTTTGGTCGCTTATATATTTGAATAAAATGTTGTCAAAACACCAAAAGCAATAACAATTTTAATTAAAGCTGCAAGCAGCAATGAAAGGGCCCTCGCACCCGGGCTCACCGCCACCCATTGGCCTTAGGAAAACAGTGAACAGTGGGCGACATGCATGTAAGCGAGTGAATAAAGGAGAATTATGGCCAAGTCATTTCAAAGTGCTGCACTTCCTGCTGCCAACACGTGGCGCTTTAACTGTACCTGAATATTGCCATGTAGATGTCTTCAGGCCAGGACTTTAATCAAACATGTGAAGTTTGGAGCAAATCGGAAATTGTATGCCTGAGTTACAACAACTTCCTGTTTCGTGACGTTATACCAAGTGTTGCATGATTTAACGTGTTTCTAGTATGTTTGGTACTTTATTGAATATGTACATATACATATACATATTGAAATGTGTTTCTGGGAGTGAATTACAGTGTAAAGCATGCCATTTCCTGTTGCCAGCAGGTGGAGCTATGACTAACTGAATATTGGCATATAGATGTCTTCAGACCAGCACTTTTATCAAACATGTGAAGTTTGGGGCAGATCAGACACTGTATAGAGTACCTCAGGGATGACGTGTTTTTGTAGGCAAAACCCGGAAGCGAGTTAGCATTTTAGGACTTCCGGTTCCATCGCCCTAAAGTCAATGAGTTTTTTGAATGGGTTTTTGCTAAATCGCCTGAAATAAGGTCTGTGGTTAACAAAGCCTCTAAATATTTTCACGTTTTGATTAATGACATAAAACACACCAGTTATAACCCACTTGTGATTTTTTTAAACCTTTATTGTGTCTTAAAAATGGCAGTTGCTAACAAATTGCTAAAAGGAACTACTTCCTTTGGCGGGGACTTTAGACGTCATCATGACAAACAGGACATTTAGAAAGCATTTCTCATGAAAAAGTGGATAAGTATTCATACACAGCACAGATCATAATCAGCGAGCATGTTTTTAAATAAAGTTGTTTTCTAAATAAAGTTTGAGGAAGCTTGGTGGTGGTGACGCTGATCCGCGATCATGGTGTGCTGTAGTCCGTTTATAGCTTACTGTTAACTCTTTATATCTGACGACTTTATTTAGGCTTCAAAATGTATAAATGTTGTGTTAACTTGTAAAGATTATCTTGATAGACAAAACGTGTAAGTGTCATAACCCTTTGTTAAACACAGAGCTTATTTTTTGCGATTTTCCAAAAGTCTATGGGAAAAATGCATTGGCTTTCAATCGAGGGAACCCGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU152784 lncRNA upstream 3114 12621919 ~ 12622715 (+) True G134359
TU152782 lncRNA upstream 4281 12619441 ~ 12621548 (+) True G134357
TU152781 lncRNA upstream 8289 12616955 ~ 12617540 (+) True G134356
TU152773 lncRNA upstream 16153 12609266 ~ 12609676 (+) True G134350
TU152771 lncRNA upstream 20464 12604600 ~ 12605365 (+) True G134348
TU152748 lncRNA downstream 290 12628018 ~ 12628374 (+) True G134326
TU152754 lncRNA downstream 5381 12633109 ~ 12633428 (+) True G134332
TU152747 lncRNA downstream 81238 12708966 ~ 12709598 (+) True G134325
TU152739 lncRNA downstream 91093 12718821 ~ 12736010 (+) True G134317
TU152723 lncRNA downstream 96651 12724379 ~ 12728852 (+) True G134301
CI01000026_12582462_12589223.mRNA mRNA upstream 36272 12582304 ~ 12589557 (+) True CI01000026_12582462_12589223
CI01000026_12562467_12570436.mRNA mRNA upstream 55055 12562467 ~ 12570774 (+) True CI01000026_12562467_12570436
CI01000026_12558237_12560933.mRNA mRNA upstream 64211 12558237 ~ 12561618 (+) True CI01000026_12558237_12560933
CI01000026_12551009_12554565.mRNA mRNA upstream 71264 12551009 ~ 12554565 (+) False CI01000026_12551009_12554565
CI01000026_12486292_12534245.mRNA mRNA upstream 91502 12485886 ~ 12534327 (+) True CI01000026_12486292_12534245
CI01000026_12653232_12657339.mRNA mRNA downstream 25344 12653072 ~ 12657836 (+) True CI01000026_12653232_12657339
CI01000026_12706512_12707086.mRNA mRNA downstream 77565 12705293 ~ 12707152 (+) True CI01000026_12706512_12707086
CI01000026_12867260_12871481.mRNA mRNA downstream 239483 12867211 ~ 12871720 (+) True CI01000026_12867260_12871481
CI01000026_12929788_12932668.mRNA mRNA downstream 301911 12929639 ~ 12933391 (+) True CI01000026_12929788_12932668
CI01000026_12966022_12977066.mRNA mRNA downstream 337868 12965596 ~ 12977588 (+) True CI01000026_12966022_12977066
TU151829 other upstream 1148922 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 1370756 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 1546749 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 2463868 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 3056669 9568739 ~ 9569160 (+) False G132667

Expression Profile