RNA id: CI01000029_07455468_07464461.mRNA


Basic Information

Item Value
RNA id CI01000029_07455468_07464461.mRNA
length 1591
RNA type mRNA
GC content 0.52
exon number 8
gene id CI01000029_07455468_07464461
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7455360 ~ 7464465 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAATGATGGAAAAGACTGAAGAACCTCCTTCCTTAAACACCGAGGAAGAGAGTTCTGAAAAAGACAAGATCTGGTGTTTGCAGCGCGTGGGGAGAGACTGTGACTGGCTGCATCTGTTCGAGGACTCAGAGGTTTCTGTTGGTCGTGGTCTGAATGTGACCCATCAGATTCTGTCAGCCAGCTGTCCTCTGATGATATCCAGAAATCACTGTGTCTTCAAGCAAAATGACGATGGACGGTGGACAGTGACGGACAATAAGAGTCTGAATGGCGTGTGGGTGAACGGGAGACGGATACCGCCAGGAAATCCCTTTTTACTCCAGCAGGGTGACTCTGTGAGACTCGGGGTCCCTCTCGACGGCAACCCGGTGGAGTTCGACTACATCCTGGTCCAGAAGAATTTCACTGAAGTGAAATCATTCTTGTCTGGGAATCATGACAAAGAATCTGGTGCTGCTCCCTTAGGCCAAAAACTGAAAAACTCTAAGCGGAAGTTTGATGGAGACGAGTCGGAGCCGTGTCCCGCTCAGCAGTCCAAATCCAAGCTGTACCGCAGCTCCTGCCCGGATAAATCGCGGGCACAGCCCTGCCCGTCCGGGGAGCGCCGGGAAACTGAGAAGTTTTTCTGTAAACCTCTGGAGGAGGACAGATGCGGTGATACGGCGGGAAGCAGCTCGAGCGCGTGCAGTGAAAGCAGTCAGCAGCTGGCTACCGTTCACCGTTACAGCAAGAACCTGATGGTCCTGAAGGGCCGCGTGGGCGACACGCAGAAGCGCGCAGCTGAGCTGGAGCGGCAGCGGCATCAGACTCCGGAGAGAGAGCGGGAGATGCAGGAACTGCAGACGCAGCTGGAGCTGTTGCGGGGTCAGCTGAGGTCGCAGAAGGAGCAGGCGCTCAAGCGCATTGAGAGTCTGGAGAAATCCTTCTGTGAGGAGGAGCGGCGCCTGGAGACTGAAAAAGCACAACAGAACGAGGTGGGCTTGAAAAAACAACTTGAGGAGGCATTAAAAGAGCACCGGAAAGTTATTGAAGAGCTCAAACATGCTCGGGAAGGATTCAAGGAGGCTCTTCAAGCCAAAGATAAGGAGCTGGAAGTTACAAAGGAAGAGAAAGAGAAGGCCAAAGCTCAGAAAGAAGAAGTGGTCACACAGATGACTGAAGTGCTGGAGAGTGAACTGCAGTGCAGCGTTTGTTCAGAGCTCTTCATTGAGGCCGTGACGCTGAACTGCGCACACAGCTTCTGTCAGCACTGCATCCGAGAGTGGCGCAAACGCAAGGACAAGTGTCCCATGTGCTGGCAGACCATCACGTCTCAGACGCGCTCTCTGGTCCTGGACAACTGCATCGACCGCATGGTGGAGAACCTGAGCGCCGACATGAGAGAGAGACGTCTGGGGCTCATCAATGAGCGGAAAGCGATGACGATTCGTCCTGGACTGAGGAGGACGATTATCTCTGAGAAACACTCAGACATGCACTAGTGAAGAACAGACACAGCTTGTTTGTTTGTTTGGTTTCGTTTAGCCATGATATTTTTATGTTTGTAGCTCACTGTATGAATTGTTTTGGGCTTTCTATGTTAAAATAAA

Function

GO:

id name namespace
GO:0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity molecular_function

KEGG:

id description
K10667 RNF8; E3 ubiquitin-protein ligase RNF8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177811 lncRNA downstream 7564 7447553 ~ 7447796 (-) True G156607
TU177688 lncRNA downstream 83439 7366327 ~ 7371921 (-) True G156495
TU177691 lncRNA downstream 85813 7365007 ~ 7369547 (-) False G156495
TU177687 lncRNA downstream 85813 7366327 ~ 7369547 (-) False G156495
TU177798 lncRNA downstream 124754 7330245 ~ 7330606 (-) True G156594
TU177704 lncRNA upstream 1406 7465871 ~ 7468189 (-) True CI01000029_07468989_07470230
TU177819 lncRNA upstream 22550 7487015 ~ 7487242 (-) True G156615
TU177705 lncRNA upstream 35870 7500335 ~ 7502988 (-) True G156507
TU177702 lncRNA upstream 39443 7503908 ~ 7514798 (-) True G156504
TU177703 lncRNA upstream 126592 7591057 ~ 7592028 (-) True CI01000029_07592969_07600728
CI01000029_07435007_07443830.mRNA mRNA downstream 11530 7434940 ~ 7443830 (-) True CI01000029_07435007_07443830
CI01000029_07419676_07421496.mRNA mRNA downstream 32692 7419635 ~ 7422668 (-) True CI01000029_07419676_07421496
CI01000029_07405933_07416452.mRNA mRNA downstream 38408 7405543 ~ 7416952 (-) True CI01000029_07405933_07416452
CI01000029_07388885_07402311.mRNA mRNA downstream 52682 7388244 ~ 7402678 (-) True CI01000029_07388885_07402311
CI01000029_07346183_07362585.mRNA mRNA downstream 92775 7346065 ~ 7362585 (-) True CI01000029_07346183_07362585
CI01000029_07468989_07470230.mRNA mRNA upstream 3487 7467952 ~ 7471489 (-) False CI01000029_07468989_07470230
CI01000029_07507652_07510065.mRNA mRNA upstream 43087 7507552 ~ 7510065 (-) True CI01000029_07507652_07510065
CI01000029_07518076_07533630.mRNA mRNA upstream 52813 7517278 ~ 7533858 (-) True CI01000029_07518076_07533630
CI01000029_07580435_07584666.mRNA mRNA upstream 115843 7580308 ~ 7585439 (-) True CI01000029_07580435_07584666
CI01000029_07592969_07600728.mRNA mRNA upstream 127494 7591959 ~ 7600728 (-) False CI01000029_07592969_07600728
TU177684 other downstream 85813 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 85813 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 284409 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 2467935 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036273 False 1795 mRNA 0.52 9 NC_007131.7 51363688 ~ 51386511 (-)