RNA id: CI01000029_07468989_07470230.mRNA


Basic Information

Item Value
RNA id CI01000029_07468989_07470230.mRNA
length 3538
RNA type mRNA
GC content 0.33
exon number 1
gene id CI01000029_07468989_07470230
representative False

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7465871 ~ 7471489 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAATAACAAGTATGCATTTTATTATTAATATTAATATTATTAATATATATATATATGTATTTGTAAATAATAGTATAACAATTAATATATCCTTTAATGAATGCCTAATAGACTATATCAACAGATATTATTGATATATTAAAAATTAATCTATATATGACCACCAATGACCATTAAATATTATATTTAATATATCTAAATGTTATACAAATTATATTTCACACACACACACACACACACACACACACACATATATATATATATATATATATATATATAATACTAATGATGCAAGTAATAATATATAAATGAAAGATCAATAAATGTAAAACAAAAAATAACAAGTGTGCATTATATATATATATATATATATATATATATGTAAATAATAGTTATTAATATATCATTTAATGAATGCATAATGCTATATTAACATATATTATTGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATAATAGTGTAACAATTAATATATCCTTTAATGAATGTAATGAATGCATAATAGGCTTTATTAACAGATATTATCGATATATTAAAAAAAAAATAATAATAGTATAAAACATATATTTTCGGGCTGTATGGTGTCTTTTGAGAGAGTGAGGAGGAGCGATCGCGTGTTCCTGTTGACTGTAAGTACACGTCAGCGGTAAAGACCTCCTCATTCTCAGATCACTTTCTCTTCCTGTTTCCAACTTTGTTGCACATGACACTTTATCTTGGTGAGTAGCTCGCGCTTTACAAACAACGACATTTACGACAAATTATCATCATCGCGCACTTCGCTTGATGAATCGCGTACTTATTTCGCGCGTTCACATGACAAAACTCACTCATGAACTTCTCTTGACAGAACGATGTTCGTGTTTCACCTGTGAAAATGCCCGGATTATGCCCACAACAGACGTGTAACAGCAGTACATGAGGTTTCCATGGTGCTTTGACATTGAAAATGAGATTCCGGTTGTTGAAGAAGAACTTTATTGTGTTCCTCGTAATTTTAGTTGTGTTTATAATGTTCTTTTATTCCATAAGACGGACTAAAGATGAAGCAAACGTGGATGTGACTGAGAAAGACAGCACAGAGACTGCTGTAATGGGTAAATTTGAGTTTGGCACCGTCCAGAATATGATAAAGTCCATCTATGACAGCAACTACAGGCAGTTCATTCAGAACGGAGACAAATTTCCATTGGAGCCGGAGGCGGTGGTCGTCGTGCAAGTCCACAATCGACCGGCGTACCTCAAAATGCTCATACAGTCCCTGGAAAAAGTCGATGGAGTACAAAACAGTCTCTTGATATTCAGCCATGACTACTTCTCAGAGGAAATTTCCAATATGGTCAAGGGAATCACCTTCTGTAGGGTCCTCCAGATCTACTTCCCCTACAGCATCCAGCTGTATCCAAATGAATTCCCAGGACAAGATCCGAATGATTGTCCGAGAGACATTTCAAAGGAGGACGCCATCAAAAAGGGATGTTTGAACGCAGAACACCCGGATTCGTACGGACACTACAGGGAAGCGTCCATCACTCAAACCAAACACCATTGGTGGTGGAAGCTGCATTTTGTGTTCGAGCGAGTGCAGGTTCTTCGCGGATACAACGGATACATCGTGTTCATCGAGGAAGACAACTACCTTCTCCCTGATTTCCACAAATACTTAAAATCCATGATCGAGCTAAAGAAAACCAGCTGTGCGGACTGCGACGTCCTCGCACTGGGCAACCACAACGGTTTATCAGGATTTCACGAGCTTTCCAGCAAAACAGAGACGGCAGGATGGCTGTCCACCAAGCATAACATAGGAATGGGAATCTCCAGAGAGCTCTACTACAAACTGATGGGATGCAACAACGCGTTCTGCACCTATGATGATTATAACTGGGACTGGACCCTCCAGAACTTGTCCGGTACGTGCGTCTCGAAACCCCTCAAGGTTCTGGTGGCTCGTGGAAGCCGGGTTCTTCACACGGGCGACTGCGGCCTGCATCAGAAGGAGGATTGCCGGCCGGAGATGGCTCAGGAAAAGGTGGATGCGTCACTTAAAGAGGCACAGTCTGCGCTTTTCCCTCCCATACTGACAGTGACGGACCACGGGCCGGTGGAGCATCAACCTCACATGAAAAACGGAGGCTGGGGGGACGTTCGCGATCACACGCTGTGCATCAACTATGCAGCTCGACTCTGAGCGGGACGTTTAAATGGGTGCCATTCAGAACATCAGGGTTACATGTTGCAGGTTAAAGATTTTGCTTTCACCAAAAATAGGAAAAATGTGAGTTATATCATGGTGTGTATATATTTGCAAATGGAAAAATGTCACTCTAAAAAATGCTGGGTTGAAGTTGGGTTGAAAATGGACAAACCCAGCGGTTGGGTTAAATGTTTGCCCAAAGTGCTGTTCAGTTTTTAACTCAACTATTGTTTAAAAATTACTATATGTCTGGCTTAAAATGAACCCAAAATAGGTTGGAAATTAAAAATCAGACACATAATTACTAGATGCAAACGTAATAATCAGAAGGTGAACATTTATTAATAAGCAGTTTAATGTTTATTGTTAAATTATTCATTAAACTTATTAATAATCAGTTATTAAACATATTAATAAATGTTAGTTTCCAACATATTTTGGGTTGATTTTAAGCAAGAAATACAGTCATTTTTAAACAATAGTTGAGTGAAATAAACCTACCCAGCAGGTTGGTCAAACATTTAACCCAATTGCTGGGTTTGTCCATTTTTCAACCCAACTTGGGTTATTTTTAACCCAGAATTTTTAGAGTGATGGATGCATCTCATGAAAAAAAACAAAAAAACAAACAAAACAAAAAAAACAGGTCGACTTTTCACCCCAAATCAATTGCTTCTGAATGTTTTACTCATGTTATTTTTTTTTTTTGTAATTCCCATACTGTAAGAAATTCACTCTAAAAAATGCTGGGTTGTTTCAAATATGGACAAACCCAAACCCAACCAATTAAAAATTTAATTAAAAAAAATATAACCCAATGGTTGGGTTTGTCCATTTTGACCCAAATTTGGGTTGAAACAACCCAGCATTTTTTAGAGTACAGGATTAACAATTTTCACTCAGAAATTGCTAGTAAATTTCACAAATAATTACAAAGAAACATCGAATTAAATATGGAATGTTTAAGTAAAAAGTTTTTAAATTTACCCGTGCATCAGCTTTTTAAAAAGTTTAAATTAGCGTACATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177811 lncRNA downstream 20156 7447553 ~ 7447796 (-) True G156607
TU177688 lncRNA downstream 96031 7366327 ~ 7371921 (-) True G156495
TU177691 lncRNA downstream 98405 7365007 ~ 7369547 (-) False G156495
TU177687 lncRNA downstream 98405 7366327 ~ 7369547 (-) False G156495
TU177798 lncRNA downstream 137346 7330245 ~ 7330606 (-) True G156594
TU177819 lncRNA upstream 15526 7487015 ~ 7487242 (-) True G156615
TU177705 lncRNA upstream 28846 7500335 ~ 7502988 (-) True G156507
TU177702 lncRNA upstream 32419 7503908 ~ 7514798 (-) True G156504
TU177703 lncRNA upstream 119568 7591057 ~ 7592028 (-) True CI01000029_07592969_07600728
TU177839 lncRNA upstream 169547 7641036 ~ 7698876 (-) True G156628
CI01000029_07455468_07464461.mRNA mRNA downstream 3487 7455360 ~ 7464465 (-) True CI01000029_07455468_07464461
CI01000029_07435007_07443830.mRNA mRNA downstream 24122 7434940 ~ 7443830 (-) True CI01000029_07435007_07443830
CI01000029_07419676_07421496.mRNA mRNA downstream 45284 7419635 ~ 7422668 (-) True CI01000029_07419676_07421496
CI01000029_07405933_07416452.mRNA mRNA downstream 51000 7405543 ~ 7416952 (-) True CI01000029_07405933_07416452
CI01000029_07388885_07402311.mRNA mRNA downstream 65274 7388244 ~ 7402678 (-) True CI01000029_07388885_07402311
CI01000029_07507652_07510065.mRNA mRNA upstream 36063 7507552 ~ 7510065 (-) True CI01000029_07507652_07510065
CI01000029_07518076_07533630.mRNA mRNA upstream 45789 7517278 ~ 7533858 (-) True CI01000029_07518076_07533630
CI01000029_07580435_07584666.mRNA mRNA upstream 108819 7580308 ~ 7585439 (-) True CI01000029_07580435_07584666
CI01000029_07592969_07600728.mRNA mRNA upstream 120470 7591959 ~ 7600728 (-) False CI01000029_07592969_07600728
CI01000029_07615776_07640353.mRNA mRNA upstream 143711 7615200 ~ 7640353 (-) True CI01000029_07615776_07640353
TU177684 other downstream 98405 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 98405 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 297001 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 2480527 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036275 True 2768 mRNA 0.37 2 NC_007131.7 51396223 ~ 51399133 (-)
bowfin (Amia calva) AMCG00004247 True 1242 mRNA 0.50 1 CM030121.1 39950692 ~ 39951933 (-)