RNA id: TU177703


Basic Information

Item Value
RNA id TU177703
length 972
lncRNA type sense_over
GC content 0.34
exon number 1
gene id CI01000029_07592969_07600728
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7591057 ~ 7600728 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTTTCACTGTATATATATAATATATATAATATAATATTCTTGAAAATAATGTCTTAATGCAATAAATAGGGGTCCGAAAAACAGGCTTCATCCAACATATAATTTCTTGACTATTATTGTGAACTTCACTAAACAGATTATTACCTGTAACTCACTTTATACACATGAAATATCTGCTGTATGATTAATATTTGTTAGTGGGAGGAGAGGACAAGCACACTTTTATTTGGGTCGTGGTATAAAAGAAATGGAACGATATTTTAGTTCATGAAAACATCCCAGATCAGGGACTCGTCAACTAGGTAGCAGAACTAAACAGGGTGCTGTGACGTGCCATCTGATTATAATCTCACCATCTATAATATCAGCTTTCAGTGGACGTAGTTTCATATGTATATATATTTACAGTCATATTTTCAAGTCCAAGTAATCCAAATATGGATCGTAGTGAGGGTCGTGCTGGACAAAACTCATGTCTTGATACCATCTGCTGATTTTCCCAGTGGTTTTGTGCTGGTTTGATTTGATAGGCTGGTTGTTTATTTTCTGTACGTTCAACACTGATGTTTGTCCGAATAAGTTCAACCATCTTTACGTTAGTAAATGTGACACTGACAGGTGCTTAGAAAAACGTATGCACTTTCACACCGAACACACGCAGGTACAGAAATGATCACTAAGATTGTTGCAAAAACTGTATCGCGCTTGTTATTTCGCTCCCTAACTTTAATTCAGACATGACAGAACATTGAAAATCAAGAGTTCATGTAATTATTAAGGGTAAATGATTGTCAAATATTTTGCTGTATATTTATTTAACACAGTTCTGCAGAGAACAAGACTTGTCAAATGACACTCCAGGGTTGCGTTTAGTTTTTGTAATTATTTCTTTTTCCATCTATGCAGTTGTATGGATATGTATTCATCATCGAATATACTCACAGATTATGATGTCAACCTGTAACTCA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177702 lncRNA downstream 76259 7503908 ~ 7514798 (-) True G156504
TU177705 lncRNA downstream 88069 7500335 ~ 7502988 (-) True G156507
TU177819 lncRNA downstream 103815 7487015 ~ 7487242 (-) True G156615
TU177704 lncRNA downstream 122868 7465871 ~ 7468189 (-) True CI01000029_07468989_07470230
TU177811 lncRNA downstream 143261 7447553 ~ 7447796 (-) True G156607
TU177839 lncRNA upstream 49008 7641036 ~ 7698876 (-) True G156628
TU177844 lncRNA upstream 51255 7643283 ~ 7653741 (-) True G156633
TU177873 lncRNA upstream 126685 7718713 ~ 7719037 (-) True G156659
TU177875 lncRNA upstream 136938 7728966 ~ 7729205 (-) True G156661
TU177964 lncRNA upstream 337731 7929759 ~ 7930343 (-) True G156736
CI01000029_07580435_07584666.mRNA mRNA downstream 5618 7580308 ~ 7585439 (-) True CI01000029_07580435_07584666
CI01000029_07518076_07533630.mRNA mRNA downstream 57199 7517278 ~ 7533858 (-) True CI01000029_07518076_07533630
CI01000029_07507652_07510065.mRNA mRNA downstream 80992 7507552 ~ 7510065 (-) True CI01000029_07507652_07510065
CI01000029_07468989_07470230.mRNA mRNA downstream 119568 7467952 ~ 7471489 (-) False CI01000029_07468989_07470230
CI01000029_07455468_07464461.mRNA mRNA downstream 126592 7455360 ~ 7464465 (-) True CI01000029_07455468_07464461
CI01000029_07615776_07640353.mRNA mRNA upstream 23172 7615200 ~ 7640353 (-) True CI01000029_07615776_07640353
CI01000029_07810274_07813211.mRNA mRNA upstream 217950 7809978 ~ 7813211 (-) True CI01000029_07810274_07813211
CI01000029_07820703_07833528.mRNA mRNA upstream 228647 7820675 ~ 7834085 (-) True CI01000029_07820703_07833528
CI01000029_07836385_07847829.mRNA mRNA upstream 244219 7836247 ~ 7847829 (-) True CI01000029_07836385_07847829
CI01000029_07850412_07853905.mRNA mRNA upstream 258152 7850180 ~ 7854017 (-) True CI01000029_07850412_07853905
TU177684 other downstream 221510 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 221510 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 420106 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 2603632 4986108 ~ 4987425 (-) False G154415

Expression Profile