RNA id: CI01000029_08007965_08016092.mRNA


Basic Information

Item Value
RNA id CI01000029_08007965_08016092.mRNA
length 2704
RNA type mRNA
GC content 0.48
exon number 8
gene id CI01000029_08007965_08016092
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8007055 ~ 8016149 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAGCACCACCTCTACTTCCATTAAAACAGCGGTTTTGTAATGAATCAGTTTTCAGTAATACATTTCTTTCGTTGTTTTTTTTCCCATCTTCGTGTTATGCCGTGTCAAATTAAAATAAACAAACTTCTGTCACATGACCCTAAACCAAGTGTGTCCGACTGCGTCCCTCAGTACTTCAAACCACGCCCCTACTAATTACGCACCCTACCTCAAGTTACGCCCCCCAGCCCCTCCCTCTGAAATCACCAGTGTCACTAGTACTGCCCTTCTTCTTCACTTTCCTCGCTGTTTAAGCTTCACTATCGCCACCTAGTGATAAGGCATACAGATCGTTTAACATAGATTACCAGACGCCAAAGTCACCCTGTTTGTTTTCATCAGTCTTTATTTTAATTATGAAACTCTACAGTAAATTTTATTTTTATGGAGGGGATAGGTTTTTAGCTATAATTACCATAAGTCTGTATTAATTTGATAGTATAATTTTTTTTATGTTTTACTACTAGCTGTTATTTCATACTTAATAAGATTCAAAAGCAATATAAACATTTCATACATAAAACATATAATAATTTACTTTAAAAGATTGTTTTAGTCAATTACGTCCACGCATGCTTCTTCGCAGTAGGCGTAACTTGTTGTAGTAGGCGTAATTTGAAGGGGCGTGGTTTATAGTACTGCGGGGTACAGACAGACCCTTTTCCCCTAAACAAACATAGTTTATGTTTGTTAATTTCCGCTTAAACTAAAAATAGATTTGTACATTGCAAAATACAATTTGCACACTTCATGTTTTACGTTAACCTATTGCTGTGTAATTAATTCTCCAGTTCCCTGTCACTCTCCTTTTCCTCTTTTTCATTTATTTATCAATCCTCCACCTCTATATTTCTGGACACAAGAAAATGCGCAACAGAAGCCACCGGAATTCTTTGAACCAGTCCGGTTCTTCCGAACGCCAGCCGGACCGAACCACTGCCGGCGCTGAGGGGTGTTTGTCCAGCGCAGCTCTTGAAGGTTTGAGATCGGAGTATTCGACTGTCTGGTTCGACCGCGGCATGTATGAGAGAGCGGAAAGCCTTTACTACTTACGACTTTTGCAGCAGCAAAATGGCACAACTGCTCCTGCGAGCTCTTCCGCTTCCTCCCGAAAGCAAGAAACCTGCCGCCATGGAGACCAAGAGGCTTGTCACCATGTTGTTCAGGCTGTGTGGGTGAACAAACCCAACTTTGACCAAGCTGAGAGCAAGTTTGTGGGCCGCTTTCCCAATCAACCAACGACCCCAAGATCCCTCCAACTGCAGGCCAACAGCCAGACGCCCTGCGACGAGGGCTACCAATCACAAACCCCGACCCCGCCCACACCTGCTTCAAGGCCAATCAACGGCCTTCCTTGCCTACCGCCATCCCCAGTGGGGGTGTGGCTACAGAAACCACTTTTCGATAGAGCCGAGGCGTCTTTCTATCAGAACCTGTATAGCCGCACCTCGCCACCGAGAAACCCGGAAACCAGCAGCGATGAATCAAGCTCCAAGCGGCGAAATAACACAGTTTCTGCTCAAAAAAAGCCTGTGGTTTGCGATCGGCGGGATTCTGAAGATGTCAGCACCGATCAAGGAGCAGCGCTGTGCTATTTCCTGCATGCTGACAGTGAGAGGGTGTGGCTAGATCGTGGTCGCTATGTGGAGGCGGAGACTCGATTCTATGAAGACGCTGTGGCGAGATCCGTCAAAACATCTATAAACCATTCTATCCGGAAGCAGAAGATGACTGCAGCGGACTGTTTGGCGCAGGAGAGGATCTGGTTCGATAAGCCGCGTTACGATGAAGCAGAACGGCGGTTTTATGAGCAGATGAACGGACCTACACAACCCAAAAAGGACACTGGCGCTAACAGTATTCTTCAGGACATCGCTAGAGCACGAGAAAACATCCAGAAATCTCTCGCTGGGCTGAAGACAACCTTGCAGCCAAGTAGAGGCTCCGCCCCTAAAATTTCAAACCCCTCCCACCGCTCCTCACCTAGCGGCGGGGGCAGCGCTGCTGATTACGGGGAGCTCGCCGCACGCATGAAGAACCTGGAACTAGAGAACCAGAGTCTACACAAAGTGGTGGAGGAGCTGCGCTCTGCTCTCAGTAAGATGGAGAGTCGAGTGTCGGCGCTGGAGAAGCGGTCAACAGCACCGACCGTTAACGGCACCGGTCCCGCCGCTCCCCAGAAAGCTCCGTCAGCTCCAGCGAAAGAGGAGGATGAAGATGAGGATGACATTGACCTGTTTGGCAGTGATGAAGAGGTGGACGAGGAGGCTGAAAGACTGAAAGAGCAGCGGCTGCAAGAATACGCCGCGAAAAAGGCCAAAAAACCGGCCCTCATCGCAAAATCATCCATCCTATTAGACGTCAAACCTTGGGACGATGAGACTGACATGGCGAAGCTGGAGGAGTGTGTGCGGTCGGTGCAGGTGGATGGGCTGCTGTGGGGGGCGTCCAAACTGGTTCCTGTGGGTTACGGCATCAAGAAACTGCAGATAAACTGTGTGGTGGAGGACGACAAGGTGGGAACAGACTTCCTGGAGGAGGAGATCACCAAGTTTGAGGACTACGTTCAGAGTGTGGACGTCGCAGCGTTCAACAAGATCTAACACACACTCACACATGTAAACACTCACGTGCCACTGCTGCTGGATGAATATTGGTTA

Function

GO:

id name namespace
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K15410 EEF1D; elongation factor 1-delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176764 lncRNA upstream 40529 7966287 ~ 7966526 (+) True G155683
TU176763 lncRNA upstream 43161 7963682 ~ 7963894 (+) True G155682
TU176712 lncRNA upstream 45895 7951604 ~ 7961160 (+) True G155632
TU176729 lncRNA upstream 63269 7942756 ~ 7943786 (+) True G155649
TU176728 lncRNA upstream 64574 7942267 ~ 7942481 (+) True G155648
TU176748 lncRNA downstream 43910 8060059 ~ 8063853 (+) True G155667
TU176755 lncRNA downstream 49551 8065700 ~ 8066608 (+) True G155674
TU176746 lncRNA downstream 68037 8084186 ~ 8092254 (+) True G155665
TU176770 lncRNA downstream 79674 8095823 ~ 8096101 (+) True G155689
TU176772 lncRNA downstream 82189 8098338 ~ 8098596 (+) True G155691
CI01000029_07997857_08002279.mRNA mRNA upstream 3958 7997696 ~ 8003097 (+) True CI01000029_07997857_08002279
CI01000029_07933165_07944093.mRNA mRNA upstream 62962 7933165 ~ 7944093 (+) False CI01000029_07933165_07944093
CI01000029_07922221_07926151.mRNA mRNA upstream 79519 7922221 ~ 7927536 (+) True CI01000029_07922221_07926151
CI01000029_07885342_07908699.mRNA mRNA upstream 97263 7884282 ~ 7909792 (+) True CI01000029_07885342_07908699
CI01000029_07672445_07687240.mRNA mRNA upstream 319182 7672445 ~ 7687873 (+) True CI01000029_07672445_07687240
CI01000029_08019292_08036434.mRNA mRNA downstream 3143 8019292 ~ 8036758 (+) True CI01000029_08019292_08036434
CI01000029_08053844_08058278.mRNA mRNA downstream 37695 8053844 ~ 8058521 (+) True CI01000029_08053844_08058278
CI01000029_08072926_08079001.mRNA mRNA downstream 56777 8072926 ~ 8079112 (+) True CI01000029_08072926_08079001
CI01000029_08140259_08140582.mRNA mRNA downstream 124026 8140175 ~ 8140945 (+) True CI01000029_08140259_08140582
CI01000029_08156225_08174249.mRNA mRNA downstream 139765 8155914 ~ 8175136 (+) True CI01000029_08156225_08174249
TU176707 other upstream 74878 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 369221 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 1099623 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 1516761 6431535 ~ 6490294 (+) False G155083
TU177125 other downstream 948669 8964818 ~ 9064541 (+) False G156007

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035093 False 1042 mRNA 0.52 8 NC_007131.7 52546204 ~ 52582645 (+)
rainbow trout (Oncorhynchus mykiss) TU126885 False 3134 lncRNA 0.41 6 NC_048566.1 9119930 ~ 9124215 (+)
eurasian perch (Perca fluviatilis) TU126885 False 1135 TUCP 0.44 6 NC_053120.1 7898672 ~ 7905247 (+)