RNA id: CI01000029_08083189_08089291.mRNA


Basic Information

Item Value
RNA id CI01000029_08083189_08089291.mRNA
length 1333
RNA type mRNA
GC content 0.51
exon number 7
gene id CI01000029_08083189_08089291
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8082757 ~ 8089291 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCACATCAGTGATCATGGCTGATGATCCTCAGAGAAACTTCCGCTCGGCGTATTATGAGAAGGTGGGATTCAGAGGAGTGGAGGAGAAGAAATCACTGGAGATTGTGCTGAAGGACAATCCACTGGATGTGGAGAAGCTGAGCACGTTCAGTCAGAGGTTCCCGCTGCCCTCCATGTACCGGATACACGTGTGGAAGGTCTTACTGGGTATCCTGCCGCCCCACAGCGATTCTCACGCCCTGGTGTCTCGGTGTCGTATCCAGCAGTTTGAGGACATCAGTGGCGCTCTGACGGCCATGCGGTTCGTCCATGCGTCCACTCCTCCGACGGAGCTTTACCTCCGCATGTACCAGCTGGAGAACCAGCAGCTTCCCCGCAGGAGCGAGCTCAGACCGCCGGACGATGAGGATCTAATCTTCCTGGCTATTGCCCGGGCGATGGAGGAGATCGTGGATGACCCGGTGGACTGCTATTGGCTGGTCAGATGTTTCGTCATCCAGTTCCAGCACAAGTTTGGAGACTCAATCCCTCACCTGCCGAAGAGTTTGGAGCACTTCCTGTCTCAGGAGGACGGCGGTCTTCTGACTCATCTGAAGGCGTGTGGCGCTCTGGACTCGCTGCCGTACCGTCTCTGGTTCAGACGCTGTTTTGCGGGCTGTTTACCAGAGTCCAGCCTGCAGAGGGTGTGGGATAAAGTGATCAGCGGCTCCTGTAAGATTCTGGTGTTTGTTGCCGTGGAGATTCTGCTCAGCTATAAGATCATGCTGATGGGAATGAGTCACCCGGAAGCAGTTTACAACTTCCTGTCTCACATGCCACAGGAAAACACAGACGCCATCGTCACTAAAGCCATCGACCTGTGGCACAAACACTGCGGGACGCCCATGCACTCTGTGTGAGAGGACGAGACTGTGACAGACTCAAAGCGGTCAGATGCGGATGACAGGAACTCAAGCTCACAGATGTGTGTGTAGTTTGTCATTTATTAGGTTCCTTTACATCAGAATCTGCATACATCATTCAGGAGTGACAGTACGTTACACGACATGCCTGTCCGCTCTCTTCCTGCGGTCTCTGAGCTAATAGCAGCAGCGGAAGAGAGAAACACTAACAGACTGTAAACAGAAAACACATCCGTCATTCAGAACATGAGGACTTCTGCTCTTCTGTGACACCAGAGTGCGTGTGATCACTCAAAGAAGCAGATCGTCCATGAAATGAGCCGATTATTCCAAGCCTGTTTGATCTTTTTTCATGGAAAAGTGCTTAAAATTCTCAGAAATTCCCTTTATATGATCCACAGAACAAAATAACGTAGGTTTCGGAATAAA

Function

GO:      GO:0016023, GO:0090630, GO:0005096, GO:0070848, GO:0031410, GO:0032007

KEGG:

id description
K20396 TBC1D7; TBC1 domain family member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177944 lncRNA downstream 35660 8043304 ~ 8047097 (-) True G156716
TU177932 lncRNA downstream 39509 8040747 ~ 8043248 (-) False CI01000029_08041274_08048935
TU177964 lncRNA downstream 152414 7929759 ~ 7930343 (-) True G156736
TU177875 lncRNA downstream 353552 7728966 ~ 7729205 (-) True G156661
TU177873 lncRNA downstream 363720 7718713 ~ 7719037 (-) True G156659
TU177946 lncRNA upstream 131099 8220390 ~ 8226568 (-) True G156718
TU177933 lncRNA upstream 146904 8236195 ~ 8237292 (-) True CI01000029_08237701_08245368
TU178094 lncRNA upstream 178109 8267400 ~ 8267662 (-) True G156850
TU178095 lncRNA upstream 181461 8270752 ~ 8271021 (-) True G156851
TU178096 lncRNA upstream 182158 8271449 ~ 8271686 (-) True G156852
CI01000029_08041274_08048935.mRNA mRNA downstream 33330 8040991 ~ 8049427 (-) False CI01000029_08041274_08048935
CI01000029_07946659_07953611.mRNA mRNA downstream 129146 7946402 ~ 7953611 (-) True CI01000029_07946659_07953611
CI01000029_07850412_07853905.mRNA mRNA downstream 228740 7850180 ~ 7854017 (-) True CI01000029_07850412_07853905
CI01000029_07836385_07847829.mRNA mRNA downstream 234928 7836247 ~ 7847829 (-) True CI01000029_07836385_07847829
CI01000029_07820703_07833528.mRNA mRNA downstream 248672 7820675 ~ 7834085 (-) True CI01000029_07820703_07833528
CI01000029_08092122_08094899.mRNA mRNA upstream 2376 8091667 ~ 8094899 (-) True CI01000029_08092122_08094899
CI01000029_08100383_08125091.mRNA mRNA upstream 10597 8099888 ~ 8125091 (-) True CI01000029_08100383_08125091
CI01000029_08178470_08183999.mRNA mRNA upstream 89129 8178420 ~ 8183999 (-) True CI01000029_08178470_08183999
CI01000029_08185095_08190376.mRNA mRNA upstream 95738 8185029 ~ 8190376 (-) True CI01000029_08185095_08190376
CI01000029_08205518_08214627.mRNA mRNA upstream 116179 8205470 ~ 8214627 (-) True CI01000029_08205518_08214627
TU177684 other downstream 713210 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 713210 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 911806 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3095332 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036311 True 1303 mRNA 0.51 9 NC_007131.7 52825215 ~ 52846212 (-)