RNA id: CI01000029_08100383_08125091.mRNA


Basic Information

Item Value
RNA id CI01000029_08100383_08125091.mRNA
length 8016
RNA type mRNA
GC content 0.49
exon number 20
gene id CI01000029_08100383_08125091
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8099888 ~ 8125091 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGCTGATCGAGACGTCGTCGTGGGGAGATGATTTGGCGGCCGTCGAGCAGCAGATAACCAATCACAGCGCGTTTCACAGCTCCATCCAGAGAAGTGTGGAGGTGGATCGAGCCCGAACGGAGCTGATGCGAGGCAAAGATCAAAACTCGGATGCAAACAAATCCTATCTCAACAAACTAGAGCAAGAATGGGACAGTCTTCAGAAAACCTCGTACCAGCGGAGCGTTCAGCTGCAGGACCTGCACAACATCATCCAGGAGATTTCCAGTCAGATCATGTGGGTGAACGACCGCGAGGAGGAGGAGCTGGTGTTCGACTGGGGCGATAAAAACATAGACACATACATCCCACAGAAACAAGAGAGCTTCTCGAAACTCATGAGCGAACTGGAGCAAAAGGAAATTGATCTGAACGTCCTGAAAGCGAAGGTGGACGGCCTGCTGAAGAACAACCACCCCGCATCTGATAAGATCCAGGCCTACATGGAGACGCTGCAGACGCAGTGGAGCTGGCTGCTACAGATCACCAAATGCATCAACGTCCATCTGAAGGAGAACGCACAATACAGCCAGTTCTTCAAGGAGACGACTGATATGAACAGAAAACTGCAGAAAGAACACGAGGGCATCCGCAAGAAGTTCTCCTGCGATAAATCCACCCTCCTGCCCAACCTGCTGGAGCTCTTACAGGGCCTGGAGAAAGAGCGCGAGCGTCTGATGGAGCAGAGAGAGATGGTGCAGCAGCTGGTGGTCAAATCCAAGAGCATTATCAGACTGAAACCCAGAAACCCAGAGGAGAAGATCACCGGTCAACATATACTCGTACAGGCGCTGTGTGACTTCAGACAGGACGAGAAGACGATCCGTAAGGACGATGAAGGGATTCTGAAGGACAACTCGGAGCGAACCACATGGTTGGTGACGGGACCTGGAGGGATGGACATGCAGGTGCCTTCGGTCTGTCTGTTAGTGCCGCCACCCAATCCACTGGCCATCAACCTGGCCAACAAGAATTCCCAGTATTATGAGGCCATTCTAAGCGTTTGGAATCAGCTGTACATCAACATCAAGAGTATGATCTCCTGGCAGTACTGTCTTCTGGACATCAACCGCATCAATTCACTCACCATCAACATGCTGGCCAAAATGGGTCCAGAAGAGTCCCGCAGCATCATCCAGAGTTTGGAGATGCACTTCCAGGAGTTCCAGAAGCACTGTCAGGGTTCAGATCTGTTCGGGGCAGAAGACCAGAAGCACATTGAGACCCAGTATGCAGGAGCCCAGCAGCACTATGGCAAACTGGTGGTGGCTCTGCCCACGTACGCCGCTCGAGGAGAGGGATCCGAGTTCGCTGCGGCGGTGAGCGTCAAACTGCTGAACGAGCTCTACGCTCTCAGATTCAAGCTGGACGAAGCCGAATCTTCCCTCGTCACCTTCCTGTACATCCCATTAGGAGAGGGCGGACTCGAAGAGTGCAGCCGCCACATCACCGGCACACAGGTGTTTCAGAAGGACATACAGACTGTGAAGGGAGAGTTTCTGAGCCTGCGTGACAGCGTTCAGGCTGAACTCAAAGACGCCACGGACACTGATAAAGCCAGATACCTGCGGGCTCAGCTGGACATCATCAACCAGAGACTAGTTAACCTGGATAATTACTGTACCGCACATCTCCAGAGGTTGAGTTTGGTGAAGTCCCTGCTGAAGGATATACTGAAAACTGAAGATGTGGTGAAGGTTTATGAAGCTCGACTGACAGAGAAAGAGACGGCGTCACTTGACCCCGAAGAGATCCAGAAATACCAGAAAGTGCTCCTGAGTATGCTCAGCGATTTGGAGCAGAAACAGGATGTGCTGAATTCACTGGTGGCTGATGTAAATAAAGTTCAGCAGTGTAACGAGCAGACGGATCAGAGCCGGTACAGGTGTATCATCAACCTCTCCCAGTACGCTGAGCATGTGAACCAGCTGTCAGACCGCTGGAAACGCATCCATTTACAGATTAACAGCAGGTTCAATGATCTGGAATCTTACCTGCCGCAGCTGCAGCGATACCTGCAGTCTAGTTCTCATCTCAGCGGTTGGATCGACGAGACTCAACGACAGATTGATGCTCAGCAGTCCGTCAAGACCGATGACGTCACAGTTTACTCCCAACTCCTCAACCAACAGAAGGCGTTAAACTCTGATATAAAGGCAAAGAGAGAGCTGTTGGAGACGGTGCAGAAAGACGGCAACACCTGCATAAATGCCATCAAGAATTATGAGCTTGAGTTAGCGTCTTACGGTGCTGGACTGGAAACTTTGCTTAACATCCCCATCAAGAGGACTGTGCTTCAGTCTCCATCTTCCTCCATTTCAGAAGAGGTCTCTTCTCTAAATGCACACTACTTAGAATTGCTCACCCGTTCAAGTGATTACTACAAACTTCTTATGGCTTCCCAGAAGAACATGGAAGAACTGAAGATGCGGAATACCAGGATTGAGATGCTCGAGGAGGAACTTCAGCAGTTGAGAGACGCCATTAAGAATCACACTGCCACGAATGCTTCTTTGCAGGAGGCTCTCCTTAAATACCAGCAGGAGCTGAACGACTCGCAGACACACCTGCTTTCTCTGGAAGAGGTGAAGAGGACTGAGACTTTGAAGTGCATGGCCACACAGGACAGCCTGGAGTCTTCTAAAAGCCAACTTCAAGAGCTTATGGACGAAGTACGTCGCCTCAAACAGCAGTTGGATGATATGGAGAGGAAGAAGAAGGTTGTGGAAGAGCGTTACATGTTTTTGCAGGAAGAACATGATGAAACCATGCGCAAGAAACTCAAAGAACTCGAGCAGGTCAGCTGGGCCAAGATGGAGCTGGAGAAGACGGTGTCTGAAAGGACCCGAGAACTGGAGCGTCTGCGCAAGGAGTTGGAAGACGAGGCTCGCCGCGTCAAGGAGGCGCAGACGGAGCTGGCAAAGGTAAGGCAGGAGCACAGCATACAGATACGAGAGGTGAAACAGACCTACGAGTCTCAAATCCTCGTTACTCAGACCAGCATGCAGAAGCTTTCGCAGCAGAAGGAAAGTGATTCTGCCTCCATGCAGCTGGAGATTGAAAAATTAGAGGGAGAATCTAGGGAGTTGAAGGAGCAGCTGCAAAGGCTTCGTCTCTCCCTCAGCCAGGAAGAGGTCCAGAGGAGACACTTGGAAGAGGAGGTACAGAGACTTAGTGCTGTAAATGCAGAGGAAGGCCGAAAGCGGCACGAGCTGGAAGCTCAAGTCCAGTTGATTCTTAGTCAGAAGCGTGAAGCAGACAACAAAACAAAGGAGGTACAAGAGAGCTCTAGTCGGACACTGCAGGAAAAGAGTAGTGAGATCAATAGTCTCACACGCTGTCTTGACGAGGAGCGACGTCTGAAAAGAACTTTAGAGACTGAGAAAAGGCGACTGGAGGGGGAGTTGGCCGACCTCAAAACTAAGAACGAAGCCTCTAATGTGGAATTGGTGCAGCTTCGCTCTTCCCACCGTGAGTTGAGCCTCATTCGGGTGGAGTTGGAGGCCCATGCCCTTGAAAAGGGCCGGTCTGAACAGACTATTACACGCCTACAAACCCGCATTCAAGAGCTCCAGGAGGAGCTGAAGCGCCTGGAAAGTGAGTTGGAGAAACAGCGGCAAGTGGCAGAAGAGGAGGCCAGCAAGCGCAGGAGATCAGAGTCGCAACTTGAAAAGAGTAGCCAGGCTATGCGAGAGTACACCACTACAATAACCACCCTGCGTAAGAGCCAGGAAGAGACCAGTCTTGAGGCAAAACACACGGACAATGAATGCAAGAAGCTGCAGGAGGCTCTAGATCGCACCTTGAAGGAGCACAAAGCTTCTTCTCAGAGCCTGGCTGCCTTGAAAGCTGAGATGAACACTCTGAAACTGCAGCTGACGCAGGAGCAGGGCCGCGTCAAAGACTCCAACCAGCGCTACGAGGCCCTTCATCGTAGCATGGAAGAGAAGACTTGTGCTTTGAACATAAGCACTGCTGAAACTGAACGTCTGCAGAGGCTCACCGAAACTCTCACCAAAGATCGCCTCCGTCTGGAGGAGGAGTTGCGCTGCGTGCGTCTAGAACACGAGGAGCTGCTCAAAGGCAAAAAACTCGGAGATCGGGATATGACTGAGCAAATCACAGCTTTGCAGAAACAGCTTGAGTCCAGTCAGCGTGCCGGTGCAGAGCATGACAGGCTTATGCGACAGCTCTCACGAGAGAGAGAAAAACTGCAACTGGAGATAGAAAATGTACAAAAACAAGCCAGAGAGACTTCCTCCGTGATCCAGACGTCACAATCTCAGTGCAGCAATCTGCAGCAAGAACGGGATGGCCTCCTCAGGAAAATGACAACGATGGAACAGGAATTGATGCGCTTGAAAAGGCAGGAAGACGAGTTAGCCCGTATCAAACTCTCACTGGAGTCAGAACTGCGTCTCAAATCACAGCTGCAGGAGGATAATGAGAGGATCAAGAAGGATTTTAACCAATGGAAGAGCAAATGTGCCACTCACGAGGAGCAACTTCGACAGCACATCTCAGAGCGCTCTGGCATGGAGAGCCAATTTAACTCTGTCAAGACCGAGATGGAGAGGCTTAGGACGCAACTGATGGAGGCTGAAGAACGCTACAGGCTGCTGTTGCAGAACTTGGAACGAGAAAGGGCACAGATGCAGGCACTTCGAGACTCACAGCAGAAGGAGTTGCTGAGACTGCAGCAGAAACCAGACGCTGCTGCTAAATACACTCAGACAGACCAAACCGACTCCTCCTCACTGGTCTTCGAAGGTGTCCGCAAGAAGGTCACGGCACAGCAGCTGCATGACTGTGGTGTGATTGACAAGTACACGTTTGATCAGTTGATGAAGGGCCAGCGGACTGTTCAGGATGTATCTGTTGACATCAGGCTCAATCTTAAAGGCACAGGAGCAATTGCGGGGCTGGCAGCAGGACCTAAAGGCAAGATGACCTTTACAGAGGCTAAGAATCAAAACTTGATTTCAGATGAAAGTGGAAACATGTTGCTGGAGGCTCAAGCTGCCACAGGGTACATCATAGATCCCCAAGCTAACATGAAGATGACTGTTGAGGAGGCTTGTCTGAATGGACTTGTGGATGAAGCTGACAAGCAGCAGCTGTTGACTGCAGAGGCTGCCTGTGTTGGGTTCAGGGATCCCAAAACTGCAAAACTCCTGTCAGCTAGTCAAGCCATGAAAAAGGGTATAATCAGCCGGGAAACAGCTCTGCGTCTCCTGCAAGCACAAGAGGCGGCGGGAGGCATCCTTGATCCCATCCTTAGTGTCTACCTCTCCAAAGATACTGCCATGGACCGTGACCTTGTTGATGAGGATCTTTATCAAGCTCTAAACGCCAGACCAGATTGCTACATTGATCCAGACACTGGTCTACGTGCTAGCTACGTTACCCTCAAGAAGCGATGCAAGGCTGACCTCAGCACTGGCTTGCTCCTGCTTCCGGCTCCAGTGAAACCCATGACTGTACAGGGACTGCGTGGCGAAGTTAACGTAACGGATCTGGTGGATGCAAAATTGCTGGAACCTTCGGACGTGGATCACCTGAGAGAGGGCAAGATTACCAGCCAAGACATTGAACACAGGCTTCGGGCTTATCTCCGAGGGTCAACTTGCATTGCTGGGATTTATGATGAGGCCAACGACTGCACCTTGCCTATCTACCAGGCCATGAAGAATGGGCTTCTGCGACCAGGCACTACCTTGGAGCTTCTGGAGGCCCAGGCCGCCTCAGGCTTCATGATTGATCCTATTAACAATGAGTACTACACAGTCGAGGAGGCCTGTAAGAAAGGACTGGTGGGTGTGGAGTTCAAAGACAAGCTTCTGTCTGCCGAGAGAGCAGTAACTGGGTACAAAGACCCAGGCACCGACAAGATGATTTCCCTTTTTGAAGCTATTGAACGGGGTCTCATAGAGAAAGGTCATGGCATTCGCCTGCTTGAGGCTCAGATTGCTAGCGGTGGCATTATTGACCCTAAACACAGTCATCGAATTGATGTTGATGTGGCGTACCAAAAAGGCTACTTTGGTGAAGAGATGAACCAGATTCTGAAAGATGAAGGAGATGACACAAAGGGTTTCTTCGACCCAAACACAGAGGACAATTTAACCTACTTGGAGCTAAAGAGCCGCTGCATCACAGATAAGAAGACGGCGCTGGTGCTTCTGCCTCTTCATGATAAGAAAAAGATGCAGCAGAAGAACTCCAAGAGGAAGAGACGGGTACTGATAGTTGATCCAGAGAGTAATAAAGAAATGACGGTGCGTGAAGCCTATGAAAAGAAACTCATAGACTATGAGACCTTTCTGGAATTGTCTCAGCAAGAGTGCGAGTGGGAAGAAACAGTCATCACTGCTGCCGATGGCTCAACCAGTACAGCTATAATGGACATGCAAACAGGCATTCAGTACGACTTGAAAGACCTGCTTGTGAAGGGAGTGATTAACCAAGATGTTCTTGATAAATATCGTTCAGGAAGTGTCACCCTTACTGAGCTTGCAGATATTATCACCAACAAGGCAAAGACCCTCAGCTCCTCCTCATCATCATTCTCATCCCAAAAGACCATGAAAAGTCAGACAATTAAAACTGAAACTCTTAAAGCAGTCGAGAGCATCTCCACTCAGCAAGATCCATCCTCGGCAAACTCCACCAAGCATATTTCCAGCATGTCAATCAAACTGACCCCATTAGTAGAAACAACTGAGGAACAGAATCCAGTCGGAGCAATTTTTGACACAGAGAAGCTGGAGAAGATCAGCGTGTGTGACGCTCTGAAGCGAGGAATCCTCGATTCCATCACAGCACAACGACTCCTGGAGGCACAAGCTTGCACCGGTGGGGTTGTGAACCCTGAAAATGGTCGCCGCATGTCTATTCAGGAAGCAACCCGCCTCGGTGTCTTGGATGATGAAATGGCTAACAGGATAAAACCTGCCCAGAAAGCCTATATTGGTTTTGAAGATGTGAAAACCAAGCGTAAAATGTCAGCCGCTGAGGCAGTCAAAGAAAAGTGGCTTCCGTATGAGGCTGGTCAGCGCTTCCTTGAATTCCAGTATTTAACCGGCGGGCTGTTCGACCCAGAGCTTGGGAGCAGGCGTTCGCTTGAGGAAGCTTTGCAGCTAGGCTGGCTGGACATGAGAGCGGCTCAGAGGCTCCAGGATACACGTCACCACCCCAAGACCCTGACCTGCCCCAAGACCAAGCTAAGGATATCCTACAAGGAGGCTATGGAAGGTTGCATGAATGAGGAGAACACAGGGGTCCGCATGCTTCCCGCCGCCACGGTTTCATCACGTGGAATCAGCAGCCCCTACAACCTCTCCAATCCAGGATCCGCCTCAGGCTCTCGGAGCGGATCCCGTAGGGGCAGCGTAGACTACACTTTATCCCCTTCTTCATCTTCCAGATACAGCAGCTTTAGCTACAGCAGAACATCTTTCAGCAGCAGATCACTCTCCTAAACAAACATTATGTACTACGCAACATTATATAATGCATCAAAGTATTTTAAGATAACATCACGAGAAAATTAGTAACATTTTAATAATCATTGAAAATGTGAATGGTGTTCCAAACAAATCAGCATTTTTTTTTTTTACCACCTTATGCACGTTTGGAAAACCAATAGCATTTAATGTTTCTTAAATCTATATTAAATGTATTAATCCAGAAATATACACTTTTAATTTTGTCTGTTTACTCACATTCTGGGTGTTTATCTACTTCTGAATTTTATTAAACAGATATGAAAGTTGTTTATAGCACTGGATGGGTAAAGATGTCTTTTCTGTTTTTGTTTTTACACTAATACTGTTGAATTGCTGTATTTTTTTTTCTTCTTCTTGAAAGTTTTAGTGCCTTCACTTTTCCTTCACTGTACTAGCGTGAATTACTCAGTGAAGTTAATAACTTACAGTGTCTGACTTCTTTTCTTACAGTTTTATTGCTCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177944 lncRNA downstream 52791 8043304 ~ 8047097 (-) True G156716
TU177932 lncRNA downstream 56640 8040747 ~ 8043248 (-) False CI01000029_08041274_08048935
TU177964 lncRNA downstream 169545 7929759 ~ 7930343 (-) True G156736
TU177875 lncRNA downstream 370683 7728966 ~ 7729205 (-) True G156661
TU177873 lncRNA downstream 380851 7718713 ~ 7719037 (-) True G156659
TU177946 lncRNA upstream 95299 8220390 ~ 8226568 (-) True G156718
TU177933 lncRNA upstream 111104 8236195 ~ 8237292 (-) True CI01000029_08237701_08245368
TU178094 lncRNA upstream 142309 8267400 ~ 8267662 (-) True G156850
TU178095 lncRNA upstream 145661 8270752 ~ 8271021 (-) True G156851
TU178096 lncRNA upstream 146358 8271449 ~ 8271686 (-) True G156852
CI01000029_08092122_08094899.mRNA mRNA downstream 4989 8091667 ~ 8094899 (-) True CI01000029_08092122_08094899
CI01000029_08083189_08089291.mRNA mRNA downstream 10597 8082757 ~ 8089291 (-) True CI01000029_08083189_08089291
CI01000029_08041274_08048935.mRNA mRNA downstream 50461 8040991 ~ 8049427 (-) False CI01000029_08041274_08048935
CI01000029_07946659_07953611.mRNA mRNA downstream 146277 7946402 ~ 7953611 (-) True CI01000029_07946659_07953611
CI01000029_07850412_07853905.mRNA mRNA downstream 245871 7850180 ~ 7854017 (-) True CI01000029_07850412_07853905
CI01000029_08178470_08183999.mRNA mRNA upstream 53329 8178420 ~ 8183999 (-) True CI01000029_08178470_08183999
CI01000029_08185095_08190376.mRNA mRNA upstream 59938 8185029 ~ 8190376 (-) True CI01000029_08185095_08190376
CI01000029_08205518_08214627.mRNA mRNA upstream 80379 8205470 ~ 8214627 (-) True CI01000029_08205518_08214627
CI01000029_08229070_08234969.mRNA mRNA upstream 103874 8228965 ~ 8234969 (-) True CI01000029_08229070_08234969
CI01000029_08237701_08245368.mRNA mRNA upstream 111826 8236917 ~ 8245368 (-) False CI01000029_08237701_08245368
TU177684 other downstream 730341 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 730341 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 928937 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3112463 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036313 True 6624 mRNA 0.49 13 NC_007131.7 52851793 ~ 52882881 (-)