RNA id: CI01000029_08229070_08234969.mRNA


Basic Information

Item Value
RNA id CI01000029_08229070_08234969.mRNA
length 1098
RNA type mRNA
GC content 0.56
exon number 9
gene id CI01000029_08229070_08234969
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8228965 ~ 8234969 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCGCGTCTCTGTTTCCTGTGTCTGTTCGCTCTGCTGTCCGTCACCTGTGGCCACCTGCAGCTCTCCGCAGGGTCACATGACATGGTCAACATCATCAATATGGCCAAGACCACATGGACGGCGGGTGTGAATTTCCAGAACGTGAAGGACGGGTATCTGAAGTCTCTCTGTGGGACGCTGCTGAAGGGCCGCCGACTGCCTGATACGGTGAAACACGCCACCAACGTGAAGCTTCCGGACAGTTTCGACCCGCGGTCCGAGTGGCCGTACTGCAAGAGCCTGGGTCAGATCCGGGATCAGGGGAACTGCGGGTCCTGCTGGGCGTTCGGGGCGGCCGAGGCCATCTCTGACCGCATCTGCATCCACAGCAAAGGAAACGTGTCGGTGGAGATCTCCGCTGAAGACCTGCTGTCCTGCTGCGATCAGTGCGGCTTCGGGTGTTCTGGAGGTTATCCGGCAGAAGCGTGGGACTACTGGACTAAATCCGGCCTGGTGACCGGAGGACTTTATGGCTCCAATGAGGGTTGCAGACCCTACACCATCCCGCCCTGTGAGCATCATGTGAACGGCACCCGGCCGCCGTGTTCAGGTGAGCAGGACACACCGGAGTGTAACGCGGCCTGTATCCCGCAGTACAGCGTCCCCTACAAACAGGACAAACACTTCGGCTATAAAGCGTACAACCTCCCGTCGGACCAGCAGCAGATCATGACTGAACTGTACAACAACGGTCCGGTGGAAGCGGCCTTCACCGTCTATGAGGACTTCCTGCTGTACAAGACGGGCGTTTACCAGCATGTGACCGGATCCGAACTGGGCGGCCATGCTGTGAAGATCCTGGGCTGGGGAGAAGAGAAGGGAACGCCGTACTGGCTGGTGGCCAACTCCTGGAACTCCGACTGGGGCGACAACGGTTATTTTAAGATCCTGAGAGGCCGTGATGAGTGTGGGATTGAGAGTGAGATGGTGGCTGGAGTTCCTCAGCTGTGAACCTTCATCACCGCGCTTTAACCTGGATAAACAGAAATATATCTGAATCTGTGTCTCATTGTCATGGTTAATGCATTCTAAAATAATATACAACAATTGATTAAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01363 CTSB; cathepsin B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177946 lncRNA downstream 2397 8220390 ~ 8226568 (-) True G156718
TU177944 lncRNA downstream 181868 8043304 ~ 8047097 (-) True G156716
TU177932 lncRNA downstream 185717 8040747 ~ 8043248 (-) False CI01000029_08041274_08048935
TU177964 lncRNA downstream 298622 7929759 ~ 7930343 (-) True G156736
TU177875 lncRNA downstream 499760 7728966 ~ 7729205 (-) True G156661
TU177933 lncRNA upstream 1226 8236195 ~ 8237292 (-) True CI01000029_08237701_08245368
TU178094 lncRNA upstream 32431 8267400 ~ 8267662 (-) True G156850
TU178095 lncRNA upstream 35783 8270752 ~ 8271021 (-) True G156851
TU178096 lncRNA upstream 36480 8271449 ~ 8271686 (-) True G156852
TU178098 lncRNA upstream 38302 8273271 ~ 8273498 (-) True G156854
CI01000029_08205518_08214627.mRNA mRNA downstream 14338 8205470 ~ 8214627 (-) True CI01000029_08205518_08214627
CI01000029_08185095_08190376.mRNA mRNA downstream 38589 8185029 ~ 8190376 (-) True CI01000029_08185095_08190376
CI01000029_08178470_08183999.mRNA mRNA downstream 44966 8178420 ~ 8183999 (-) True CI01000029_08178470_08183999
CI01000029_08100383_08125091.mRNA mRNA downstream 103874 8099888 ~ 8125091 (-) True CI01000029_08100383_08125091
CI01000029_08092122_08094899.mRNA mRNA downstream 134066 8091667 ~ 8094899 (-) True CI01000029_08092122_08094899
CI01000029_08237701_08245368.mRNA mRNA upstream 1948 8236917 ~ 8245368 (-) False CI01000029_08237701_08245368
CI01000029_08250264_08262665.mRNA mRNA upstream 15280 8250249 ~ 8262665 (-) True CI01000029_08250264_08262665
CI01000029_08384203_08407906.mRNA mRNA upstream 148656 8383625 ~ 8407906 (-) False CI01000029_08384203_08407906
CI01000029_08463083_08479077.mRNA mRNA upstream 228023 8462992 ~ 8479190 (-) True CI01000029_08463083_08479077
CI01000029_08568672_08576837.mRNA mRNA upstream 332062 8567031 ~ 8577143 (-) False CI01000029_08568672_08576837
TU177684 other downstream 859418 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 859418 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1058014 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3241540 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036314 False 2069 mRNA 0.43 11 NC_007131.7 52886927 ~ 52902693 (-)