RNA id: CI01000029_08237701_08245368.mRNA


Basic Information

Item Value
RNA id CI01000029_08237701_08245368.mRNA
length 2128
RNA type mRNA
GC content 0.48
exon number 7
gene id CI01000029_08237701_08245368
representative False

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8236195 ~ 8245368 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCTGGAGTTGGCGGAAAGAGCGCAGTGTCGTTCTCCGTGCTCAAGCGCTCGTTCTCGCTGCGCGGCTCCCCGCGGTCGGTGCTCACTGGCGGGCGGCGCAGCGCGCAGGAAGGGTGGCTGGTGGCCCGTCCTCCTCACCCGCTCAGAGCTCACCGACACCCCGCGTATGTGTGTTTCTCCTACCAGGACTCCATGAGCGAAACCCTGCGGACCTGCTACGCGTATCTGAACCAGACCAGCCGGAGCTTCGCGGCGGTGATTCAGGCCCTGGATGGAGAACTGCGGCATGCCGTGTGTATTTTCTATCTGGTTCTGCGAGCCCTGGACACCGTAGAAGACGACATGACCATCCCGCTGGAGAAGAAGGTCCCGCTGCTGCACGACTTCCACACGTTCCTGTATCAGCCCGAGTGGTGCTTCACAGAGAGCAGAGAGAAAGACCGACGGGTCCTGGAGGATTTCCCTACGATTTCAGTGGAGTTCAGGAACTTGGGCCAAGAGTATCAGGACGTCATTTCAGACATCTGTCACCGGATGGGTGTAGGAATGGCTGAATTCCTGGAGAAGAAAGTTGCTTCAATGAAGGAGTGGGACAAATACTGTCATTATGTGGCGGGTCTGGTGGGGATCGGACTGTCCCGACTCTTCTCTGCGTCCCAGCTGGAGGATGTTGAGGTGGGCCGGGACACGGAGCTGGCCAACTCCATGGGTCTGTTCCTCCAGAAGACCAACATCATCAGGGACTATCTGGAGGACCAGCAGCAGGGACGGGCCTTCTGGCCGCAGGAGGCCTGGAGTCAGTTCGCGTCCCGTCTGGAGGATTTGGCCCAGCCTCAGCACCTGAGCTCCGCCCTGTCCTGTCTCAACCTGCTGGTGACCGACGCCCTCCGCCACGTCCCTGATGTCATCGCATACCTGTCCCGCCTCCGCAACCAGAGCGTCTTCAACTTCTGTGCCATTCCACAGGTGATGGCGATAGCGACTCTGTCTGCGTGCTACAACAATCCTCAGGTGTTTCAGGGTGTGGTGAAGATCCGGAAGGGTCAGGCGGTGACGCTCATGATGCAGGCCACAAACATGGGCGCCGTTCAGAGCATCATCGCTCAGTACAGTCAGGAGATCCTGCAGAAAGTTTCCGTCACGGATCCGTCCCAGGAAAAGACTCTGTGTATCCTGAATCTCATCTGTGAGAAGAGCCTGTCTGGAGCGGCGCTGTCGTCCCGAGCGCACCACATCTCTCCGATGTACGTTTCGGCGGCCATGCTGCTGGCGGCCCTCAGCTGGCAGTACCTTAATGCCACGGCGGGGCCACCAGGGGGCGCAGACATGCAGGGACACTGAGACGCTTCCCTCCGAACGCTGACGGCTGAACCTGCCAGAACAACAGGCTTGAGAGGGGTTGTTTTTTTTTATTTAGGTGAATCTCACAAAAACACACGTCCAGCTCATGTTTCACCTCATTTTTCTCAAGCGAGGAAAAAATAAGAAATCATATTTTGCATTAAGAAAATTAAGCCTATTATAATTTTTAACTTTGTAAAATATTTTTTTACACAAATAAAATTAAAGAAAACATATATTTTTATTTAAAAAATATAAATTACATATAATATATATGTATGTGAAAGTGTAGTTTTTATAAAAGTAAATTATATTTATGCATTTTATTTATATATATATATATATATATATATATATATATATATATATGTATATATGTAATTTATATGTATGGTCGTTGGTCATATATAGCTTAAATATTTAATTTCAGTTTTTTTCACTTGTTTTTGTGGTGAAATATGACCCGAACATGTTCCTGAGATTCATCTGGTTGTTCGGTGTCCGGTTACAGTAATTGCGTCTTTGACGGACGTTCTTCAAGCTTCATTTGAGACTCTCAAAGAAAATTATTGTAAAGTCATTTTCTGACGCTGAGGGTTTTGTTGATTTTCTGTGTGTTTTTTGTTCCATCAAACCATTCTAAAAAATCAAGCACACGTGCAGAAAACAATTTTCATTACAATATAAAAATAATCTGTCCTTTAGACAGAAATTTGTTTTGCTTTACCTTTAATAGTTCGCAATTACATGCAGACTGTCAAGCGGTTGCGGTCTGACGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177946 lncRNA downstream 10349 8220390 ~ 8226568 (-) True G156718
TU177944 lncRNA downstream 189820 8043304 ~ 8047097 (-) True G156716
TU177932 lncRNA downstream 193669 8040747 ~ 8043248 (-) False CI01000029_08041274_08048935
TU177964 lncRNA downstream 306574 7929759 ~ 7930343 (-) True G156736
TU177875 lncRNA downstream 507712 7728966 ~ 7729205 (-) True G156661
TU178094 lncRNA upstream 22032 8267400 ~ 8267662 (-) True G156850
TU178095 lncRNA upstream 25384 8270752 ~ 8271021 (-) True G156851
TU178096 lncRNA upstream 26081 8271449 ~ 8271686 (-) True G156852
TU178098 lncRNA upstream 27903 8273271 ~ 8273498 (-) True G156854
TU178139 lncRNA upstream 113950 8359318 ~ 8359524 (-) True G156895
CI01000029_08229070_08234969.mRNA mRNA downstream 1948 8228965 ~ 8234969 (-) True CI01000029_08229070_08234969
CI01000029_08205518_08214627.mRNA mRNA downstream 22290 8205470 ~ 8214627 (-) True CI01000029_08205518_08214627
CI01000029_08185095_08190376.mRNA mRNA downstream 46541 8185029 ~ 8190376 (-) True CI01000029_08185095_08190376
CI01000029_08178470_08183999.mRNA mRNA downstream 52918 8178420 ~ 8183999 (-) True CI01000029_08178470_08183999
CI01000029_08100383_08125091.mRNA mRNA downstream 111826 8099888 ~ 8125091 (-) True CI01000029_08100383_08125091
CI01000029_08250264_08262665.mRNA mRNA upstream 4881 8250249 ~ 8262665 (-) True CI01000029_08250264_08262665
CI01000029_08384203_08407906.mRNA mRNA upstream 138257 8383625 ~ 8407906 (-) False CI01000029_08384203_08407906
CI01000029_08463083_08479077.mRNA mRNA upstream 217624 8462992 ~ 8479190 (-) True CI01000029_08463083_08479077
CI01000029_08568672_08576837.mRNA mRNA upstream 321663 8567031 ~ 8577143 (-) False CI01000029_08568672_08576837
CI01000029_08606896_08609369.mRNA mRNA upstream 360138 8605506 ~ 8610176 (-) True CI01000029_08606896_08609369
TU177684 other downstream 867370 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 867370 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1065966 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3249492 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036316 False 1564 mRNA 0.55 8 NC_007131.7 52907397 ~ 52939501 (-)