RNA id: CI01000029_08250264_08262665.mRNA


Basic Information

Item Value
RNA id CI01000029_08250264_08262665.mRNA
length 1263
RNA type mRNA
GC content 0.60
exon number 6
gene id CI01000029_08250264_08262665
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8250249 ~ 8262665 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGAGTCTGACAGAGCCGCTGGCCCGCAGGAGTCCAGTGCCATGAGGATGGAGACGGAGCCGGGTAGCGTAGAGGTCAGCGCCGATGCTCCGGTACTCACACCCGACACGCACGAGTGGAATAATCGGGGCGGACGATCACCTGTGGACATGTATCAAGGTGTAACGATGACCACAAACCACGGACCCGCGTCTTACGAGCCCGGCTTCCTCCATAACGCCGCGTCTGCGGCCGCTTCACCGGTGTACGTGACACCCACCCGGGTCACCCCGATGATCCCGGCGCTGCCGTACCTCCAGACGCCGCAGCAGAGCAGCCCCGTGTCCGGACACTCGGGATGGACGCAGCCGGGCGCGGACACGGTCGCCTCTTACAACTCCACCGGCGGGCACCATCATTCTCCAGTGTCCAGGTTCACTTTCTCCACGAGCCCGCCGTTAAGCTCCGGGGTCGCGACAGCCCGGGAGAGCGCGACCTACACAAGCCCGCTGAACATCTCCACTGGCGGGCGGGAGCACTACGGGTCCCGGGGTCTGAGCGGCTCCTATCACAGCGGGTACCCGGCCTACGTCAGCCCGAACATCGGAGGCTCATGGGCGGCGTCGCACTTCGACAGTTCCGTGCTGCACAGTCTCCAGACCGGAGGACCGGCCGGAGCCGCGCGACACCCGAATTTAGAGCTGTTCGATGAGTTTGCGGAGGGTCGAGAGTGTGTGAACTGCGGGGCGATGTCCACTCCTCTGTGGCGGCGGGACGGGACGGGTCATTACCTGTGTAACGCCTGCGGACTCTACCACAAGATGAACGGGATCAACCGGCCGCTCATTAAACCACAGAGACGACTGTCTGCGTCCAGGCGGGTTGGTTTGTCCTGCACTAACTGTCAGACGACCACAACGACCCTCTGGAGACGTAATGCAGAGGGAGAGCCGGTCTGCAACGCCTGCGGACTCTACATGAAACTCCACGGGGTTCCTCGTCCTCTCGCCATGAAGAAAGAGGGAATTCAGACCCGCAAACGCAAACCCAAAAACATCAACAAGTCCAAACCTGGTCTCTGCCTTTCCGACTTATATGGGAACTCCAAGCTCAAATTCTGCTCTCAAACTTTCTCCGAGTGGATCTTCCAGCTCCAAAAGCGACGTCTGGAACAACCTGATTCTGGCGTAAGAAACCGAGATGCTCCTCCTGAAAGCGTCACTCAGACTCGGCCTGCAGAACTTCATCCAGACCAGAAGAACCAATGAGCTTCAGTGATTAAA

Function

GO:

id name namespace
GO:0048565 digestive tract development biological_process

KEGG:

id description
K09183 GATA4; GATA-binding protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177933 lncRNA downstream 12957 8236195 ~ 8237292 (-) True CI01000029_08237701_08245368
TU177946 lncRNA downstream 23681 8220390 ~ 8226568 (-) True G156718
TU177944 lncRNA downstream 203152 8043304 ~ 8047097 (-) True G156716
TU177932 lncRNA downstream 207001 8040747 ~ 8043248 (-) False CI01000029_08041274_08048935
TU177964 lncRNA downstream 319906 7929759 ~ 7930343 (-) True G156736
TU178094 lncRNA upstream 4735 8267400 ~ 8267662 (-) True G156850
TU178095 lncRNA upstream 8087 8270752 ~ 8271021 (-) True G156851
TU178096 lncRNA upstream 8784 8271449 ~ 8271686 (-) True G156852
TU178098 lncRNA upstream 10606 8273271 ~ 8273498 (-) True G156854
TU178139 lncRNA upstream 96653 8359318 ~ 8359524 (-) True G156895
CI01000029_08237701_08245368.mRNA mRNA downstream 4881 8236917 ~ 8245368 (-) False CI01000029_08237701_08245368
CI01000029_08229070_08234969.mRNA mRNA downstream 15280 8228965 ~ 8234969 (-) True CI01000029_08229070_08234969
CI01000029_08205518_08214627.mRNA mRNA downstream 35622 8205470 ~ 8214627 (-) True CI01000029_08205518_08214627
CI01000029_08185095_08190376.mRNA mRNA downstream 59873 8185029 ~ 8190376 (-) True CI01000029_08185095_08190376
CI01000029_08178470_08183999.mRNA mRNA downstream 66250 8178420 ~ 8183999 (-) True CI01000029_08178470_08183999
CI01000029_08384203_08407906.mRNA mRNA upstream 120960 8383625 ~ 8407906 (-) False CI01000029_08384203_08407906
CI01000029_08463083_08479077.mRNA mRNA upstream 200327 8462992 ~ 8479190 (-) True CI01000029_08463083_08479077
CI01000029_08568672_08576837.mRNA mRNA upstream 304366 8567031 ~ 8577143 (-) False CI01000029_08568672_08576837
CI01000029_08606896_08609369.mRNA mRNA upstream 342841 8605506 ~ 8610176 (-) True CI01000029_08606896_08609369
CI01000029_08690880_08711534.mRNA mRNA upstream 427660 8690325 ~ 8711919 (-) True CI01000029_08690880_08711534
TU177684 other downstream 880702 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 880702 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1079298 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3262824 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036318 True 1214 mRNA 0.56 6 NC_007131.7 52952116 ~ 52967878 (-)