RNA id: CI01000029_08384203_08407906.mRNA


Basic Information

Item Value
RNA id CI01000029_08384203_08407906.mRNA
length 1741
RNA type mRNA
GC content 0.48
exon number 9
gene id CI01000029_08384203_08407906
representative False

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8382870 ~ 8407906 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAATATGCGGAGGATTTGTTCGGAGAACTCTTTAATGAAGCTCATTCCTTCTCGTTCCGAGTGAACTCACTCCAGGAGAGAGTCGACCGCCTGTCAATCAGTGTCACTCAACTCGACCCGAAAGAGGAGGAGTTGTCTCTTCAGGACATCACGATGAGGAAGGCTTTCCGCAGCTCCACCATCCAGGACCAGCAGCTGTTTGAGCGTCAGTCTCTGCCCGTCCCGATGCAGGAGACGTACGAGCTGTGCGAACAACCTCCACCGCTGAACATCCTCACGCCCTACAGCTCATTTGCCATTTTAACCAGCAAACTCAAATTAATCGAGCGAAAACGAGAAAGAAAGTGTGATGAAGGAGAAAAACGTACAAAGTCAGAAAGCGAATGTGAGAAACAGAGGAGGGATGATGGGAAGGAAGGTCTGAAGTTCTACACCAACCCGTCGTACTTCTTCGACCTGTGGAGAGAGAAAATGCTGCAGGACACAGAAGACAAGAGGAAAGAGAGGCGGAAACAGAAGGAGAGATTCGCAGAGGAAACGTTTAACTACACAGACATTAACCATCAGGTGTCAGACTGCACAATCAATCGAAATCATGAGTGCGATTATCAAATCTTTATTCATGAAATAAACTTGCAGGATCCCCACATGTATGATCAGGTCTATAAATATTTAGACCTTCCAGTGCAGCTGAAGAACATCGACCGCCCTCATGACCCCGAGAAAGTCCCGCGGGCGCCTCACGACCGGAAGAAGGAGTGGCAGAAGATGGCGTTAGGGGCGGAGCTTGCTGATGACGACATGGAAGACAAACACAAAGACACGAACGGATCAGCAACGTACCATGACCACAGGCAAATGTACATCGATCATCTGGACGGGCCGTTCTCTCTGGCCGCGCTGCCGTACTCTCAGATGAACGAACTCCTGAGCCGTACGGGAGAGCGAACGTACGGCCGCCCGCACGACCCTCCGCCGCCGCCGCCCACGTACCCGCCCGACGTCAAACCAGCCTCCGTTATCAGGGATCCAGCTGAGGAAGGTGGAGGAGCAGCGGGAACAAGAGGCCAAACACGAGCGCGTGGGGAACGACGTGGCCACCATCCTGTCCCGCCGCATCGCTGTGGAGTACAGCGACTCCGAGGACGACTCCGAGTTTGATGAGGTCGACTGGATGGAATGAGAGAGAAACACAGACTTCAGGAAGGAGGCATAAAAACGGCACATGAAATCTCAGTTAACCTTCCTCTCCTAATAAGAGTTTCCCATAAACACTCCGATCAGTCGTAGTTCAATTCAGGAAACATCAGGACTGCAGACGGCTGTGTTTGATGTTCCCAGAATGCTTTGCTTTAATGTTTTTTATCCACATGTTCCACTTGTTGTGCAATTGATGAACAAAAATAACAATGTTGGAGGGTTTTTTTATCTGTCATACTTCTTTCATTCGAATCTGTCTGTCTTTAATTCTCAGTATGAACAACAAAACTGGTTCTTTTGTGGTTATTGTTCAGCGTGAGACGGACGGCAGCGACCTCTTCTGGTCACGACAGGAACGTCTCACGGATCCAAGGTTTCATATCAGAATGTGACGGATGCTTATTATACTTTATATATCATCAAAACCGTTCTTCCATTTCAGAGATGTGATGTTTGATGTCATTGTGCGGTTGTGATGGACAAAGTTAAAGAAAAAAAAATGAAGGAATGATTTTATTAAGGTGTCAAGAAGGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177955 lncRNA downstream 2168 8380726 ~ 8381457 (-) True G156727
TU177966 lncRNA downstream 14333 8365066 ~ 8369292 (-) True G156738
TU178146 lncRNA downstream 19273 8364127 ~ 8364352 (-) True G156902
TU178144 lncRNA downstream 20403 8363011 ~ 8363222 (-) True G156900
TU178143 lncRNA downstream 20683 8362642 ~ 8362942 (-) True G156899
TU178158 lncRNA upstream 90352 8498258 ~ 8503179 (-) True G156913
TU178164 lncRNA upstream 109211 8517117 ~ 8517370 (-) True G156919
TU178081 lncRNA upstream 158466 8566372 ~ 8567433 (-) False CI01000029_08568672_08576837
TU178080 lncRNA upstream 159718 8567624 ~ 8567918 (-) True CI01000029_08568672_08576837
TU178075 lncRNA upstream 352839 8760745 ~ 8761214 (-) True G156831
CI01000029_08250264_08262665.mRNA mRNA downstream 120960 8250249 ~ 8262665 (-) True CI01000029_08250264_08262665
CI01000029_08237701_08245368.mRNA mRNA downstream 138257 8236917 ~ 8245368 (-) False CI01000029_08237701_08245368
CI01000029_08229070_08234969.mRNA mRNA downstream 148656 8228965 ~ 8234969 (-) True CI01000029_08229070_08234969
CI01000029_08205518_08214627.mRNA mRNA downstream 168998 8205470 ~ 8214627 (-) True CI01000029_08205518_08214627
CI01000029_08185095_08190376.mRNA mRNA downstream 193249 8185029 ~ 8190376 (-) True CI01000029_08185095_08190376
CI01000029_08463083_08479077.mRNA mRNA upstream 55086 8462992 ~ 8479190 (-) True CI01000029_08463083_08479077
CI01000029_08568672_08576837.mRNA mRNA upstream 159125 8567031 ~ 8577143 (-) False CI01000029_08568672_08576837
CI01000029_08606896_08609369.mRNA mRNA upstream 197600 8605506 ~ 8610176 (-) True CI01000029_08606896_08609369
CI01000029_08690880_08711534.mRNA mRNA upstream 282419 8690325 ~ 8711919 (-) True CI01000029_08690880_08711534
CI01000029_08713541_08717320.mRNA mRNA upstream 305282 8713188 ~ 8717320 (-) True CI01000029_08713541_08717320
TU177684 other downstream 1014078 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1014078 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1212674 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3396200 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036325 True 1056 mRNA 0.50 5 NC_007131.7 53306742 ~ 53366137 (-)
bowfin (Amia calva) TU5497 False 1290 TUCP 0.40 2 CM030121.1 25794052 ~ 25795791 (+)
tiger barb (Puntius tetrazona) TU209701 False 903 TUCP 0.53 7 NC_056718.1 25330926 ~ 25377416 (-)