RNA id: CI01000029_08463083_08479077.mRNA


Basic Information

Item Value
RNA id CI01000029_08463083_08479077.mRNA
length 1203
RNA type mRNA
GC content 0.57
exon number 5
gene id CI01000029_08463083_08479077
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8462992 ~ 8479190 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAATATCTAACACAGTACAAAATGTATAGCAGAGTCTGTATATTCCAGATGGAGACGCACACGACTGAAAAGTGAGCGAGACGTGAGATGAGACTGCAGCGTACCTACAGGATGAACAAGTGTTTCCTGCTGCGCGCGAGTCTCCTGCTGTCGCTGCTGTGCGTCTGCGCTCACGTCTATGTGGAGCTTAATGGCTTGTGTCTGACGGCGGCGGTTCGACTCCAGAAACAGACCCCGAATCGCAGGCATCAGAAGGCCGTTACCAGGGCAGCTTTGGCTGATGCTGCATCCACGTGCTGCCGGCCGCTGAAACATCACAGACAGATTCCTAGATGGAAGATCGACCTTGAACCGTGGGCCGCAGAGACGCGCGGCTTACAGGAGGAAGCCGATCGATTCCTCAGATACATCTCTACACCGCAGGTGTCCTGTGAGAGACCAGCGTCGGCACCGCCCATGCTTGACAGAGAGGATCATGGGTCTTGGGTTCTGTGTTTGGACCGCCGGTTCAGTCTGGCCGAGCGTATCGCGTCGAAACGCTGCCGTGTGTATTCGCTCAGGTTAGGAGCGGAGGATGATGGTCTGGAGCGGCTGTTAGCCGGATCAGGCTGTGAGGTTCACTGCTTCGACCCCAGTATCAGAGGAGCTCACCTGCAGGACGCACACATGTGGCTCCACCGGCTCTCCGTCGACTGGAGGGACCCGAACCCCGCCGTCCCGGCCCAGAGACTCCACAGCGGCACCAAGAAACTCGCCGCCATCCTCAACGACTTCGGCCACAGACAGGTGGATGTCCTGAAGGTGGACCTGGAAAGTGCCGAGTGGAAGATTCTGGAGAACCTGATTCTGGAGCAGGTGCTGGACTCCATCGGCCTGCTGCTGCTGGAGCTGCACCTGCACTGGGCGGGGTTTGAGGTGGGCGGAGACGAGCCCTCGGTGGTCCGCTATTGGTTCAGCCTGCTCAGGGAGTTGGAGCGCGCTCATTTCCGCCTCTATCACAGCTACAGCGACCCGACCAAACCACGCCTGTTCCTGCACAGAAACCTGCAGAACACCAGCAGCTCCTTCGTCCTGGGATGGGTGAACACTCAGTTTGTGCCGCGAGGATGATCAGGCTCTGTTCTGAAGAGAAACACTTCATAACGCAAACCCAGCGGTCTTGGGTTGATTAGTGCGACGTTCTCAACAGTGTGTGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177945 lncRNA downstream 78337 8382870 ~ 8384655 (-) True CI01000029_08384203_08407906
TU177955 lncRNA downstream 81535 8380726 ~ 8381457 (-) True G156727
TU177966 lncRNA downstream 93700 8365066 ~ 8369292 (-) True G156738
TU178146 lncRNA downstream 98640 8364127 ~ 8364352 (-) True G156902
TU178144 lncRNA downstream 99770 8363011 ~ 8363222 (-) True G156900
TU178158 lncRNA upstream 19068 8498258 ~ 8503179 (-) True G156913
TU178164 lncRNA upstream 37927 8517117 ~ 8517370 (-) True G156919
TU178081 lncRNA upstream 87182 8566372 ~ 8567433 (-) False CI01000029_08568672_08576837
TU178080 lncRNA upstream 88434 8567624 ~ 8567918 (-) True CI01000029_08568672_08576837
TU178075 lncRNA upstream 281555 8760745 ~ 8761214 (-) True G156831
CI01000029_08384203_08407906.mRNA mRNA downstream 55086 8383625 ~ 8407906 (-) False CI01000029_08384203_08407906
CI01000029_08250264_08262665.mRNA mRNA downstream 200327 8250249 ~ 8262665 (-) True CI01000029_08250264_08262665
CI01000029_08237701_08245368.mRNA mRNA downstream 217624 8236917 ~ 8245368 (-) False CI01000029_08237701_08245368
CI01000029_08229070_08234969.mRNA mRNA downstream 228023 8228965 ~ 8234969 (-) True CI01000029_08229070_08234969
CI01000029_08205518_08214627.mRNA mRNA downstream 248365 8205470 ~ 8214627 (-) True CI01000029_08205518_08214627
CI01000029_08568672_08576837.mRNA mRNA upstream 87841 8567031 ~ 8577143 (-) False CI01000029_08568672_08576837
CI01000029_08606896_08609369.mRNA mRNA upstream 126316 8605506 ~ 8610176 (-) True CI01000029_08606896_08609369
CI01000029_08690880_08711534.mRNA mRNA upstream 211135 8690325 ~ 8711919 (-) True CI01000029_08690880_08711534
CI01000029_08713541_08717320.mRNA mRNA upstream 233998 8713188 ~ 8717320 (-) True CI01000029_08713541_08717320
CI01000029_08722756_08730839.mRNA mRNA upstream 243309 8722499 ~ 8731563 (-) True CI01000029_08722756_08730839
TU177684 other downstream 1093445 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1093445 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1292041 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3475567 4986108 ~ 4987425 (-) False G154415

Expression Profile