RNA id: TU178081


Basic Information

Item Value
RNA id TU178081
length 1062
lncRNA type sense_over
GC content 0.33
exon number 1
gene id CI01000029_08568672_08576837
representative False

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8566372 ~ 8577143 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACATCTGAGACATTTAATATTTTGCCTCTCATCACTATTTATGTCTGTCTTTCTTCAGGGAAAAAATTAACAAAATCAAAAATTTGAGCGGGGGAAGTTTCTGAAAATTGACACGGAATGACCCAAATGTGATTCTGGCACTAATTTAGTCTTTATTATGTTTTTACCACCTTTTACTGGAAGCTGCTGGTGAAATTGCCTGAAAGGTTGTGATATCTTGGCCTAGTGTTAAATTCATCTCATTTTGTGCAATGAATATGGTAGACACCAAATTATGTTTGCTAATCTTTCCGGAAAGTTTCTGTTTTCTACTTGAATTGTATTGGCTTGAATAATAATGATTTTTAAAGGACTCGTGTACAAAATAAGAGGACGATCCAAAGGTTTTTGTCCACAAATAAAATTCGGTCCCCTCAGTGAGTACTTTCCTCATCTCCTGCCTATAGTTTGTAATGTATGACCTACAAAATGAATGCAATATTTGCATGTTTTTCTGTAATGTATTAAATTGTTGGGATACAGGTTGTATCTGGCCCAGTGTAACTATCTATACTGCTATTAGAATGAAAAATGCCCTCATGTCTTTTGATTGACTGTAAGTTATACTGTAAGATCAATATATTTTATGTTTGTATATACCGAGGCTTGAATTTTCTCTGCATATCGAAAGATGTGTAAATAGAATTGCGTATGTTTGTGCTGACTAAAACATGCAGTTGGAAAAGAAGCGTATAGAACGGACAGAATGGGCTTTTAAAGAAATGCTGCTCTTTTTGTAACGGTTATGGATTGTATTAAATGTAAATATATAGTATTACATTAAAAAGGGAAGTTTAGACTGATGCATTGAAAACTAAATATGTGTGATTTACCTGTGAGAAATGTAAATAAATTGTATTTTATGGACTTGCAGAAGTACTGAAGTGATTTTAATTTGAATAGCTTTAGATTTTTCTTTTTCTAGTTTGTCGTTACTGCTGTTACTGCTGAAGAGATGGTCAAATGTTTGTCCTATTTTTGTATGAAATTCTGTGCTGCTCCCATTTGAAATGTGGTTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178164 lncRNA downstream 49002 8517117 ~ 8517370 (-) True G156919
TU178158 lncRNA downstream 63193 8498258 ~ 8503179 (-) True G156913
TU177945 lncRNA downstream 181717 8382870 ~ 8384655 (-) True CI01000029_08384203_08407906
TU177955 lncRNA downstream 184915 8380726 ~ 8381457 (-) True G156727
TU177966 lncRNA downstream 197080 8365066 ~ 8369292 (-) True G156738
TU178080 lncRNA upstream 191 8567624 ~ 8567918 (-) True CI01000029_08568672_08576837
TU178075 lncRNA upstream 193312 8760745 ~ 8761214 (-) True G156831
TU178192 lncRNA upstream 213330 8780763 ~ 8781076 (-) True G156947
TU178194 lncRNA upstream 214858 8782291 ~ 8782514 (-) True G156949
TU178210 lncRNA upstream 282692 8850125 ~ 8850659 (-) False G156965
CI01000029_08463083_08479077.mRNA mRNA downstream 87182 8462992 ~ 8479190 (-) True CI01000029_08463083_08479077
CI01000029_08384203_08407906.mRNA mRNA downstream 158466 8383625 ~ 8407906 (-) False CI01000029_08384203_08407906
CI01000029_08250264_08262665.mRNA mRNA downstream 303707 8250249 ~ 8262665 (-) True CI01000029_08250264_08262665
CI01000029_08237701_08245368.mRNA mRNA downstream 321004 8236917 ~ 8245368 (-) False CI01000029_08237701_08245368
CI01000029_08229070_08234969.mRNA mRNA downstream 331403 8228965 ~ 8234969 (-) True CI01000029_08229070_08234969
CI01000029_08606896_08609369.mRNA mRNA upstream 38073 8605506 ~ 8610176 (-) True CI01000029_08606896_08609369
CI01000029_08690880_08711534.mRNA mRNA upstream 122892 8690325 ~ 8711919 (-) True CI01000029_08690880_08711534
CI01000029_08713541_08717320.mRNA mRNA upstream 145755 8713188 ~ 8717320 (-) True CI01000029_08713541_08717320
CI01000029_08722756_08730839.mRNA mRNA upstream 155066 8722499 ~ 8731563 (-) True CI01000029_08722756_08730839
CI01000029_08732049_08738371.mRNA mRNA upstream 164399 8731832 ~ 8738371 (-) True CI01000029_08732049_08738371
TU177684 other downstream 1196825 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1196825 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1395421 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3578947 4986108 ~ 4987425 (-) False G154415

Expression Profile