RNA id: TU178080


Basic Information

Item Value
RNA id TU178080
length 295
lncRNA type sense_over
GC content 0.34
exon number 1
gene id CI01000029_08568672_08576837
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8566372 ~ 8577143 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTAAAATCTGTTGACTTTATCAATCTTTGTTTCATTATATGCCAACAGTGACAGCTCAAAAATGGCCTTTCGATCACTGAAAATGGGAAAAAAATCAACAATTTGAACATGGAGCTGCTTTGAGATCCTCATATCTTTTGGACTGAACTATATAGGGCCTTGAAAATGAAGATTTCAAAAGAAAAGTTTATTAAGAACCAGAATCTAAAAGGATATTAAGATATCTTGAACACTTTTAGAGTTAACTTGAGGCAAAGAAACACAAGAAGTGCTTTTGAGCTGTCACTGTTGGCA

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178081 lncRNA downstream 191 8566372 ~ 8567433 (-) False CI01000029_08568672_08576837
TU178164 lncRNA downstream 50254 8517117 ~ 8517370 (-) True G156919
TU178158 lncRNA downstream 64445 8498258 ~ 8503179 (-) True G156913
TU177945 lncRNA downstream 182969 8382870 ~ 8384655 (-) True CI01000029_08384203_08407906
TU177955 lncRNA downstream 186167 8380726 ~ 8381457 (-) True G156727
TU178075 lncRNA upstream 192827 8760745 ~ 8761214 (-) True G156831
TU178192 lncRNA upstream 212845 8780763 ~ 8781076 (-) True G156947
TU178194 lncRNA upstream 214373 8782291 ~ 8782514 (-) True G156949
TU178210 lncRNA upstream 282207 8850125 ~ 8850659 (-) False G156965
TU178211 lncRNA upstream 282207 8850125 ~ 8850686 (-) True G156965
CI01000029_08463083_08479077.mRNA mRNA downstream 88434 8462992 ~ 8479190 (-) True CI01000029_08463083_08479077
CI01000029_08384203_08407906.mRNA mRNA downstream 159718 8383625 ~ 8407906 (-) False CI01000029_08384203_08407906
CI01000029_08250264_08262665.mRNA mRNA downstream 304959 8250249 ~ 8262665 (-) True CI01000029_08250264_08262665
CI01000029_08237701_08245368.mRNA mRNA downstream 322256 8236917 ~ 8245368 (-) False CI01000029_08237701_08245368
CI01000029_08229070_08234969.mRNA mRNA downstream 332655 8228965 ~ 8234969 (-) True CI01000029_08229070_08234969
CI01000029_08606896_08609369.mRNA mRNA upstream 37588 8605506 ~ 8610176 (-) True CI01000029_08606896_08609369
CI01000029_08690880_08711534.mRNA mRNA upstream 122407 8690325 ~ 8711919 (-) True CI01000029_08690880_08711534
CI01000029_08713541_08717320.mRNA mRNA upstream 145270 8713188 ~ 8717320 (-) True CI01000029_08713541_08717320
CI01000029_08722756_08730839.mRNA mRNA upstream 154581 8722499 ~ 8731563 (-) True CI01000029_08722756_08730839
CI01000029_08732049_08738371.mRNA mRNA upstream 163914 8731832 ~ 8738371 (-) True CI01000029_08732049_08738371
TU177684 other downstream 1198077 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1198077 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1396673 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3580199 4986108 ~ 4987425 (-) False G154415

Expression Profile