RNA id: CI01000029_08690880_08711534.mRNA


Basic Information

Item Value
RNA id CI01000029_08690880_08711534.mRNA
length 2620
RNA type mRNA
GC content 0.51
exon number 15
gene id CI01000029_08690880_08711534
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8690325 ~ 8711919 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGTCTAAAGCCGAGGTGATGTATTGCTCTTCACCAGCTCTCTGCAGGACTGGTTAGCAGTGTGAAATATCCCATAATCTGCATGTGGCCTGCATGCGGCCAATCAAATCCACAGGTCCCGCCTTCTCCTGCTCCCACCAGCCAATCAGCAGCCTCCTCAGACGGCCCTCTGCTGGTTAAGATCACATGATCTCCTCCAGCCAATCGGCAGCCTCCCTTTGATGGGTGACATCACTAACTAGCTGCTTCCCTCCAGCAGCGGAGCTTCATTTTCTGCTGAGAGTGTTTGTGCTAAAATGGAGGCTAACAGCTCAACTTAGCCGGCAGCCGTATCGCGCCCGTTTGGACTGATAGATGTTGACATGCTCTAAAGACGAGGCCAGGATGGTTCTGGATGCTCCGAGCGCGAACGGGCCCTTTCAGCCGGTGGCCCTCATGCACTTTAGAGCGTTTTTGCATGCATTTGTGAGCACACTAGATGCATTCGATGGCCAAAAATGCTGTTCAGATGTTCCTCCTGCCGAGCAGGAGAAATTGTTCGTGCAGAAGCTGCGTCAGTGCTGCGTGCTCTTCGACTTCGTGTCCGACCCCCTGAGCGACCTGAAATGGAAGGAGGTGAAGCGGGCGGCGCTCAGCGAGATGGTGGAGTACATCACGCACAACAGGAACGTCATCACCGAGCCCATCTATCCTGAGGTGGTTCACATGTTTGCAATCAACATGTTTCGGACGTTACCACCATCATCCAACCCAACCGGCGCAGAGTTCGATCCAGAGGAGGATGAACCCACGTTAGAGGCAGCTTGGCCACACCTGCAGCTCGTCTATGAATTTTTCCTGAGGTTTTTAGAGTCACCAGACTTTCAACCCAACATAGCTAAGAAATACATCGACCAGAAGTTTGTGTTGCAGCTCCTGGAGCTGTTCGATAGTGAAGACCCTCGAGAGCGTGACTTTCTGAAGACGACTCTCCACCGCATCTACGGAAAGTTCCTGGGTCTCAGAGCTTACATCAGGAAACAGATTAATAATATTTTCTATAGGTTCATCTATGAAACAGAGCATCATAACGGAATAGCCGAACTACTGGAAATATTAGGAAGCATAATCAACGGCTTTGCCTTACCGCTGAAAGAAGAGCACAAAATCTTCCTTTTAAAAGTTTTGTTACCTTTGCATAAAGTGAAGTCACTCAGTGTTTATCACCCACAGCTGGCTTACTGTGTGGTGCAGTTTCTAGAGAAGGACAGCACGCTTACTGAGCCGATCTGTACGACTGTAACACCAGCTAGTTTTAACCAGCATATGTGGGCTTCATATTTGATGTTTGTTTGTCAGGTGGTGATGGCTCTTCTAAAGTACTGGCCAAAGACTCACAGTCCAAAGGAAGTGATGTTTCTGAACGAGCTGGAAGAGATTCTGGACGTCATCGAGCCCTCTGAGTTTGTCAAAGTGATGGAGCCGCTCTTTAGACAGCTGGCCAAATGCGTCTCCAGTCCACATTTCCAGGTTGCAGAGCGAGCTCTCTACTACTGGAACAACGAGTACATCATGAGTTTAATCAGTGACAACGCTGCGAGGATCCTGCCCATCATGTTCCCGTCGCTGTACCGAAACTCCAAAACCCACTGGAATAAGACGATCCACGGGCTGATCTATAACGCTCTGAAGCTGTTCATGGAGATGAATCAGAAGCTGTTTGACGACTGTACGCAGCAGTTCAGAGCAGAGAAGAACAAAGAAAAGGCGAAGTGGAAAGAGCGCGAGGAGGCGTGGATAAAGATCGAGAATCTCGCCAAATCCAACCCACAGTTTCTCATGTACATCGACTCCTCCAGCCTCAGCAGTCCGATGGACATGGAGACGGACGGGCCGACAATTGATGATGTCATGATGCTAAAAAAGACCGTAGAAGAAGAAGCCACTCAGCTCCACAGAGACCAGCGTAAGGAACGGCCCCTGATGCGCCGCAAGTCCGAGCTTCCTCAGGACACGTCCATGATGAAGGCCCTGGAGACGCACCGGCGCGCCGAGGACATGATCGGCACCCAGGACAGCCACTAGAGGACCACAGACGCCCAGAACCAAACCCAGCCCAGTCTCGCCCCGTCGCGTTCGGCACCGACGGCAGCAGCGGCGCAGGACGGCCCCGGTGTGACCCACAAACACACACAGCCAGTTCTGCCCTCCAGAAGCCACCGCACCGGAGTCCGTCCCCCATCCAGACCCCCTTAAACCGCGCTAATCTAGTCCCGTCTCACCCTCGGGTCCGTCTTCTTCTGCTTTCCTTCTTTTAAGCTGTTACGTGCCTCTGCACCAACTGGAAGAGCACTTGACGCGACTGCGTTCGGAGCGAGCGATCGATTCTCAGGTTGTTCGGAGGGCCGAGAGAGCAGCGCTGATTTTTGGGCCGACGTCTCGCTTTCTTTCTGTGTCTTTTATGTATGAACTGTCATTTTAGTCTGCGATGATATGGTCCGTCACTCGCCAGTGCAAGTACCCTTCCGTTTTTGTCAAGAAACTTGGCAATAAGTTCGTCCGGGGAGATTTTGGTTGTTCAAACAATGGTGAAATGGCCTTATGGTGGTTAATTTCTTTTTCCCAACAGGCAATATTAAA

Function

GO:      GO:0008601, GO:0000159, GO:0007165

KEGG:

id description
K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178080 lncRNA downstream 122407 8567624 ~ 8567918 (-) True CI01000029_08568672_08576837
TU178081 lncRNA downstream 122892 8566372 ~ 8567433 (-) False CI01000029_08568672_08576837
TU178164 lncRNA downstream 172955 8517117 ~ 8517370 (-) True G156919
TU178158 lncRNA downstream 187146 8498258 ~ 8503179 (-) True G156913
TU177945 lncRNA downstream 305670 8382870 ~ 8384655 (-) True CI01000029_08384203_08407906
TU178075 lncRNA upstream 48826 8760745 ~ 8761214 (-) True G156831
TU178192 lncRNA upstream 68844 8780763 ~ 8781076 (-) True G156947
TU178194 lncRNA upstream 70372 8782291 ~ 8782514 (-) True G156949
TU178210 lncRNA upstream 138206 8850125 ~ 8850659 (-) False G156965
TU178211 lncRNA upstream 138206 8850125 ~ 8850686 (-) True G156965
CI01000029_08606896_08609369.mRNA mRNA downstream 80149 8605506 ~ 8610176 (-) True CI01000029_08606896_08609369
CI01000029_08568672_08576837.mRNA mRNA downstream 113182 8567031 ~ 8577143 (-) False CI01000029_08568672_08576837
CI01000029_08463083_08479077.mRNA mRNA downstream 211135 8462992 ~ 8479190 (-) True CI01000029_08463083_08479077
CI01000029_08384203_08407906.mRNA mRNA downstream 282419 8383625 ~ 8407906 (-) False CI01000029_08384203_08407906
CI01000029_08250264_08262665.mRNA mRNA downstream 427660 8250249 ~ 8262665 (-) True CI01000029_08250264_08262665
CI01000029_08713541_08717320.mRNA mRNA upstream 1269 8713188 ~ 8717320 (-) True CI01000029_08713541_08717320
CI01000029_08722756_08730839.mRNA mRNA upstream 10580 8722499 ~ 8731563 (-) True CI01000029_08722756_08730839
CI01000029_08732049_08738371.mRNA mRNA upstream 19913 8731832 ~ 8738371 (-) True CI01000029_08732049_08738371
CI01000029_08754053_08755396.mRNA mRNA upstream 42023 8753942 ~ 8755580 (-) True CI01000029_08754053_08755396
CI01000029_08823850_08904325.mRNA mRNA upstream 110344 8822263 ~ 8904559 (-) True CI01000029_08823850_08904325
TU177684 other downstream 1320778 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1320778 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1519374 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3702900 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036332 False 7556 mRNA 0.40 16 NC_007131.7 53898193 ~ 53963515 (-)