RNA id: CI01000029_08713541_08717320.mRNA


Basic Information

Item Value
RNA id CI01000029_08713541_08717320.mRNA
length 707
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000029_08713541_08717320
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8713188 ~ 8717320 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGTCGAATAAGAAGGGTGGAAACAGCGTCCCGCCAACCACACAGCTGCTGAAGGGGAAACAGTCGGCATCTCAGGCGACGGTTAAGAAAGAGAAGAGGCAGAGCTCGTCGAGATTCAGCCTGAGCAACAATCGAGAACTCCAGAAACTGCCTGCGTTCAAAGATAAAGGCTTTATTCCTCAGAGCTTCGAGGTTCTTGTAGCAGCTGCAGGTGTTGAAATGCGGTTTCCTGTCAGCGTTTCGCTGCGGTCGCTGTTTATCGTGCATCTGAGACGGGCTCTTGTCACAAACTGTTATGTCATCGTTTTTTTCTTTATTTACCATCAGCAGGGCGATGGTTTTATTTCCGGCTGAAACCCTACACAGGTAAAGCCAAGATATGATGTTTCTCGCAAAAGGATGTGTTTTAGGGAAACGACACATTTACTGTAGTAACTGTCAGGATGCCGTACGTGGGTCTCATTTGTGCGTTTATCAATAACATTATGATGCAAAAAGAGCATGATGATGTAAGAGTGATGCTAGGCTTTTGTGGATGGTTACCAGGGTGTTTTTAAAAAGATTAATTAAATCGTTAAAGTTTTATGCACTCATTTTATACCACCCCCTTTTTATGATTCATAATTTTTATTTTCTTCAGTAGGCAAAACAATACATTCCATTTACAGATAATTAAGTGTTTATTACCACCCTTTTTTGATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178080 lncRNA downstream 145270 8567624 ~ 8567918 (-) True CI01000029_08568672_08576837
TU178081 lncRNA downstream 145755 8566372 ~ 8567433 (-) False CI01000029_08568672_08576837
TU178164 lncRNA downstream 195818 8517117 ~ 8517370 (-) True G156919
TU178158 lncRNA downstream 210009 8498258 ~ 8503179 (-) True G156913
TU177945 lncRNA downstream 328533 8382870 ~ 8384655 (-) True CI01000029_08384203_08407906
TU178075 lncRNA upstream 43425 8760745 ~ 8761214 (-) True G156831
TU178192 lncRNA upstream 63443 8780763 ~ 8781076 (-) True G156947
TU178194 lncRNA upstream 64971 8782291 ~ 8782514 (-) True G156949
TU178210 lncRNA upstream 132805 8850125 ~ 8850659 (-) False G156965
TU178211 lncRNA upstream 132805 8850125 ~ 8850686 (-) True G156965
CI01000029_08690880_08711534.mRNA mRNA downstream 1269 8690325 ~ 8711919 (-) True CI01000029_08690880_08711534
CI01000029_08606896_08609369.mRNA mRNA downstream 103012 8605506 ~ 8610176 (-) True CI01000029_08606896_08609369
CI01000029_08568672_08576837.mRNA mRNA downstream 136045 8567031 ~ 8577143 (-) False CI01000029_08568672_08576837
CI01000029_08463083_08479077.mRNA mRNA downstream 233998 8462992 ~ 8479190 (-) True CI01000029_08463083_08479077
CI01000029_08384203_08407906.mRNA mRNA downstream 305282 8383625 ~ 8407906 (-) False CI01000029_08384203_08407906
CI01000029_08722756_08730839.mRNA mRNA upstream 5179 8722499 ~ 8731563 (-) True CI01000029_08722756_08730839
CI01000029_08732049_08738371.mRNA mRNA upstream 14512 8731832 ~ 8738371 (-) True CI01000029_08732049_08738371
CI01000029_08754053_08755396.mRNA mRNA upstream 36622 8753942 ~ 8755580 (-) True CI01000029_08754053_08755396
CI01000029_08823850_08904325.mRNA mRNA upstream 104943 8822263 ~ 8904559 (-) True CI01000029_08823850_08904325
CI01000029_08925803_08926581.mRNA mRNA upstream 208309 8925629 ~ 8926581 (-) True CI01000029_08925803_08926581
TU177684 other downstream 1343641 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1343641 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1542237 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3725763 4986108 ~ 4987425 (-) False G154415

Expression Profile