RNA id: CI01000029_08732049_08738371.mRNA


Basic Information

Item Value
RNA id CI01000029_08732049_08738371.mRNA
length 2547
RNA type mRNA
GC content 0.46
exon number 11
gene id CI01000029_08732049_08738371
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8731832 ~ 8738371 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACCTCTTGTGACTCCCTGCCCCAAAAAGGACAGAAGGGGTCTGCGGTGGAGGACGCCCCCCCTCGCCTCGCACACTCTTACTTTAGCACTCCTGAGTGTAGTGGGCATTCCTTCTGGAACTTTCTCAATGGGGGTTTCGAGAAACTTTGCTCACAAATGCCTGAGAAAGCCGCACAGCCCGTGATGGAGGAGGAAGTTGAGACCTTTGCCTTTCAGGCTGAGATTGCTCAACTGATGTCTCTGATCATCAACACCTTCTATTCCAACAAAGAGATCTTCCTCAGAGAGCTCATCTCCAACTCTTCAGATGCACTGGACAAGATCAGATACGAGAGCTTGACAGACCCAAGCAAACTTGATACATGCAAGGACTTGAAGATTGAACTCATCCCTGATCAGAAAGAGCGCACTCTCACAATCATTGATAGCGGCATTGGCATGACCAAAGCTGACCTCATCAATAACCTGGGCACCATTGCCAAATCCGGTACAAAGGCCTTCATGGAGGCCCTGCAGGCGGGAGCAGACATTTCAATGATTGGTCAGTTTGGTGTGGGTTTCTATTCCGCCTACCTGGTGGCCGAGAAAGTCACAGTCATCACCAAACACAACGATGACGAGCAGTACATCTGGGAGTCTGCTGCTGGTGGTTCCTTCACAGTTAAACCAGACTCTGGTCAACCCCTTGGACGTGGCACCAAAGTCATTCTCCACCTTAAAGAGGATCAGTCTGAATATGTTGAGGAGAAGCGCATCAAAGAAGTTGTGAAGAAGCACTCTCAGTTCATCGGTTACCCTATCACGCTCTTTATTGAGAAACAGAGAGAGAAGGAGGTTGACCTTGAAGAGGGAGAAAAGGAGGAGGAGGTGCCAGCCGAAGATGACAAAGACAAACCTAAGATTGAGGACTTGGGGGCTGATGAGGATGAAGACTCCAAAGATGGCCAGAACAAGAGGAAGAAGAAGGTCAAGGAAAAGTACATTGATGCTCAGGAGCTGAACAAGACCAAACCTCTGTGGACCCGTAACCCCGATGACATCACCAATGAGGAGTATGGCGAGTTCTACAAGAGTTTAAGCAATGACTGGGAGGACCACTTGGCTGTCAAGCACTTCTCGGTTGAGGGCCAGCTGGAGTTCCGCGCTCTGCTGTTTATACCCAGAAGAGCCTCCTTTGACCTTTTCGAGAACAAGAAAAAAAGAAACAACATCAAGTTGTATGTGCGCAGGGTCTTTATCATGGACAACTGCGAGGAGCTCATTCCAGAATATCTCAACTTCATTAAGGGTGTTGTGGACTCTGAGGATCTGCCACTGAACATCTCCAGAGAGATGCTTCAACAGAGCAAGATCCTGAAAGTGATCCGCAAGAACCTGGTCAAGAAGTGTCTGGAGCTCTTCACTGAACTTGCCGAGGACAAAGACAACTACAAGAAGCTTTATGAACAGTTTTCCAAGAACATCAAGCTTGGCATCCATGAGGACTCCCAGAACCGCAAAAAACTCTCTGAGCTGCTTCGCTACTACACATCTGCTTCTGGAGACGAGATGATTTCCCTCAAGGACTATGTGTCTCGCATGAAGGACACCCAGAAGCACATCTACTACATCACTGGTGAGACCAAAGATCAGGTGGCCAATTCGGCCTTTGTGGAGCGCCTGCGCAAAGCCGGTCTGGAGGTGATCTACATGATCGAGCCCATCGATGAGTACTGCGTACAGCAGCTGAAGGAATACGATGGCAAAAATCTGGTATCAGTGACCAAAGAGGGTCTGGAGCTTCCCGAGGACGAGGATGAGAAGAAGAAGCAGGAAGAGTTGAAGGCCAAATATGAGAACTTATGCAAGATCATGAAAGACATTCTTGACAAAAAGATTGAGAAGGTCACTGTCTCAAACCGTTTGGTGGCTTCACCTTGCTGCATCGTCACAAGCACATACGGCTGGACGGCCAACATGGAGAGGATCATGAAGTCTCAGGCCCTGAGAGACAACTCCACCATGGGATACATGACGGCTAAAAAGCACCTTGAAATCAACCCAGTCCATCCCATCGTTGAGACCCTCCGAGATAAAGCAGAAGCCGACAAGAACGACAAGGCTGTGAAAGACTTGGTCATCCTGCTGTTCGAAACTGCTCTGCTCTCCTCTGGATTCACCCTGGAAGACCCACAAACACATGCCAACCGCATCTACAGGATGATCAAACTTGGTCTTGGCATTGATGATGATGACTCTACCGTTGAGGACATTACTCAACCCGCTGATGAAGATATGCCAGTTCTGGAGGGTGATGATGACAGTTCCAGAATGGAGGAAGTTGACTAAAGAGTTTTAGTGTAAATAACACTAATTTGTTAATGTATTTAATTTATTGTTTTTTTTTTTTGTTTTTTGTTTTTGTAAAAAAAAAAAAGAAAAAACAATCTCCACATCCCGAAGTGATCTGTTTGTGTCTACATGTAGTTATCAGAAAATTGTATTTTCTGAACTTTTCTAATTTAAGCTGTTTTTTTGTAAACCTAAGTTGAACATTTTTAATAAA

Function

GO:

id name namespace
GO:0000086 G2/M transition of mitotic cell cycle biological_process

KEGG:

id description
K04079 HSP90A, htpG; molecular chaperone HtpG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178080 lncRNA downstream 163914 8567624 ~ 8567918 (-) True CI01000029_08568672_08576837
TU178081 lncRNA downstream 164399 8566372 ~ 8567433 (-) False CI01000029_08568672_08576837
TU178164 lncRNA downstream 214462 8517117 ~ 8517370 (-) True G156919
TU178158 lncRNA downstream 228653 8498258 ~ 8503179 (-) True G156913
TU177945 lncRNA downstream 347177 8382870 ~ 8384655 (-) True CI01000029_08384203_08407906
TU178075 lncRNA upstream 22374 8760745 ~ 8761214 (-) True G156831
TU178192 lncRNA upstream 42392 8780763 ~ 8781076 (-) True G156947
TU178194 lncRNA upstream 43920 8782291 ~ 8782514 (-) True G156949
TU178210 lncRNA upstream 111754 8850125 ~ 8850659 (-) False G156965
TU178211 lncRNA upstream 111754 8850125 ~ 8850686 (-) True G156965
CI01000029_08722756_08730839.mRNA mRNA downstream 269 8722499 ~ 8731563 (-) True CI01000029_08722756_08730839
CI01000029_08713541_08717320.mRNA mRNA downstream 14512 8713188 ~ 8717320 (-) True CI01000029_08713541_08717320
CI01000029_08690880_08711534.mRNA mRNA downstream 19913 8690325 ~ 8711919 (-) True CI01000029_08690880_08711534
CI01000029_08606896_08609369.mRNA mRNA downstream 121656 8605506 ~ 8610176 (-) True CI01000029_08606896_08609369
CI01000029_08568672_08576837.mRNA mRNA downstream 154689 8567031 ~ 8577143 (-) False CI01000029_08568672_08576837
CI01000029_08754053_08755396.mRNA mRNA upstream 15571 8753942 ~ 8755580 (-) True CI01000029_08754053_08755396
CI01000029_08823850_08904325.mRNA mRNA upstream 83892 8822263 ~ 8904559 (-) True CI01000029_08823850_08904325
CI01000029_08925803_08926581.mRNA mRNA upstream 187258 8925629 ~ 8926581 (-) True CI01000029_08925803_08926581
CI01000029_08974137_08982053.mRNA mRNA upstream 234388 8972759 ~ 8982107 (-) True CI01000029_08974137_08982053
CI01000029_09062820_09065407.mRNA mRNA upstream 324405 9062776 ~ 9065407 (-) True CI01000029_09062820_09065407
TU177684 other downstream 1362285 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1362285 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1560881 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3744407 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036337 False 2375 mRNA 0.47 10 NC_007131.7 53982326 ~ 53992952 (-)
bowfin (Amia calva) AMCG00004236 True 2816 mRNA 0.47 12 CM030121.1 39839368 ~ 39846699 (+)