RNA id: CI01000029_08754053_08755396.mRNA


Basic Information

Item Value
RNA id CI01000029_08754053_08755396.mRNA
length 1639
RNA type mRNA
GC content 0.49
exon number 1
gene id CI01000029_08754053_08755396
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8753942 ~ 8755580 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGCCTTATGGGAAACACTATCATTCGAATACATTCCAAAATTAGAGGACCAAGAATAAGCTGCATTTTCTATGATAACGTTTTGTACCCAATCTGCTGGAGCAGACCTTTTTTGCATCGCCAACCTGCCGCCCTCGTCTCCAGAATCGCTTCAACGACCGTCCCGCAGGGCGACTGCCTATCATGAGATTCCGAATTTACAAGCGAAAGGTGGTAATACTGACTCTAGTGGTGGTAATCTGTGGATTCGCCGTCTGGAATAGTGGTAAGACGAAGAAGGCAAGCGCCGTGTTTCCCAAGGAGGTGGAGACGGGGAAGCGGAGCAGCGCCGCCGGTCCAGTACAAGTAACGATACCAGTAACCCGGAAACCTGTCAACGAGACTCTTCCGGAAAAACAGCAAGCAGTTGCCAAGCCTGAAGCAGACAACCAGACTCTGGTGTACAGAGGGATCGTGTTTCAACTCAACTTTGACCAGACCCTCAGAAATGAGGAAAAGTTTCGCAACGTGCGCCAGAAGGACGACCTTGTCATCGTCGTTCAGGTTCACAACCGTCCCGAATACCTACGGCTTTTGGTGGGCAGCTTGAGAAAAGCGAAAGGAATTGAGAACGTCTTGCTGATATTCAGCCATGATTTCTGGTCTCCGGAAATCAACCAGATAGTCGCGTCCGTCGACTTCTGTTTGGTCCTTCAGATATTCTTCCCCTTTAGCATCCAACTCTATCCTCAAGAGTTCCCCGGGAATGATCCCAGAGATTGCCCTCGAGACATTCCCAGGAAAGATGCCTTAACGTTAGGCTGCATAAACGCAGAGTACCCGGACTCCTTCGGACACTATCGAGAAGCCAAGTTCTCACAGACCAAACATCATTGGTGGTGGAAGTTGCACTTTGTTTGGGATCGAGTCCGAGTGTTGAAGGAACACCAAGGACTCTTGTTGCTCATCGAAGAGGACCACTACCTCGCTCCCGACTTTCAGCACCTTCTCAAACTGATGGTGTCCCTAAAGAAAGAACAGTGTCCCGACTGCGATATCTTATCTCTGGGAAGCTACGGACACATCGGCTACTCCAGCAAAGCAAACAAAGTGGAGGTGAAAGCGTGGAAGTCCACCGAACACAACATGGGAATGGCGTTGAACAGAAATACGTACCAGAAACTCCTCAGATGCACCGATGCCTTCTGCACCTACGACGACTACAACTGGGATTGGTCGTTGCAGTACCTTACCGTGAGCTGTTTGCCCACGTTCCTAAAGGTCATGGTGAGCGAGGCGCCTCGGATTTTCCACGCCGGCGACTGCGGCATGCACCACAAGAAGTCGGCTTGCATGCCGAGCAGCCAGAAGACAAAGATCGAGAACATTCTCCAGAGCAGCGGGAACCAGTTGTTCCCGAAACAGCTGCTTATCACAAAGAGACTCCCTTCTTCCGGGGCCAAAGGATTGGCTCCGCACGTCAAAAACGGAGGTTGGGGAGACATCAGGGACCATGAACTCTGCAAGAGTTACCTTCGATTACAGTGACTTTACATTCTTTCTTTTTTGTTGTTTTTGCATCCTCTAATGAAAGCCTTTAAGAGTTCTTTATGGACTACTACTTCTTATTGCCTGTTTTATTGAAATATTCCAAATAAA

Function

GO:

id name namespace
GO:0005795 Golgi stack cellular_component

KEGG:

id description
K00736 MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178080 lncRNA downstream 186024 8567624 ~ 8567918 (-) True CI01000029_08568672_08576837
TU178081 lncRNA downstream 186509 8566372 ~ 8567433 (-) False CI01000029_08568672_08576837
TU178164 lncRNA downstream 236572 8517117 ~ 8517370 (-) True G156919
TU178158 lncRNA downstream 250763 8498258 ~ 8503179 (-) True G156913
TU177945 lncRNA downstream 369287 8382870 ~ 8384655 (-) True CI01000029_08384203_08407906
TU178075 lncRNA upstream 5165 8760745 ~ 8761214 (-) True G156831
TU178192 lncRNA upstream 25183 8780763 ~ 8781076 (-) True G156947
TU178194 lncRNA upstream 26711 8782291 ~ 8782514 (-) True G156949
TU178210 lncRNA upstream 94545 8850125 ~ 8850659 (-) False G156965
TU178211 lncRNA upstream 94545 8850125 ~ 8850686 (-) True G156965
CI01000029_08732049_08738371.mRNA mRNA downstream 15571 8731832 ~ 8738371 (-) True CI01000029_08732049_08738371
CI01000029_08722756_08730839.mRNA mRNA downstream 22379 8722499 ~ 8731563 (-) True CI01000029_08722756_08730839
CI01000029_08713541_08717320.mRNA mRNA downstream 36622 8713188 ~ 8717320 (-) True CI01000029_08713541_08717320
CI01000029_08690880_08711534.mRNA mRNA downstream 42023 8690325 ~ 8711919 (-) True CI01000029_08690880_08711534
CI01000029_08606896_08609369.mRNA mRNA downstream 143766 8605506 ~ 8610176 (-) True CI01000029_08606896_08609369
CI01000029_08823850_08904325.mRNA mRNA upstream 66683 8822263 ~ 8904559 (-) True CI01000029_08823850_08904325
CI01000029_08925803_08926581.mRNA mRNA upstream 170049 8925629 ~ 8926581 (-) True CI01000029_08925803_08926581
CI01000029_08974137_08982053.mRNA mRNA upstream 217179 8972759 ~ 8982107 (-) True CI01000029_08974137_08982053
CI01000029_09062820_09065407.mRNA mRNA upstream 307196 9062776 ~ 9065407 (-) True CI01000029_09062820_09065407
CI01000029_09067123_09072979.mRNA mRNA upstream 311185 9066765 ~ 9072979 (-) True CI01000029_09067123_09072979
TU177684 other downstream 1384395 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1384395 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1582991 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3766517 4986108 ~ 4987425 (-) False G154415

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036342 True 1987 mRNA 0.47 2 NC_007131.7 54067041 ~ 54075136 (-)
bowfin (Amia calva) AMCG00000375 True 1302 mRNA 0.49 1 CM030141.1 12950875 ~ 12952176 (-)
mexican tetra (Astyanax mexicanus) TU34710 True 1985 lncRNA 0.33 2 NC_035899.1 43350895 ~ 43356027 (+)