RNA id: CI01000029_08823850_08904325.mRNA


Basic Information

Item Value
RNA id CI01000029_08823850_08904325.mRNA
length 4512
RNA type mRNA
GC content 0.47
exon number 16
gene id CI01000029_08823850_08904325
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8822263 ~ 8904559 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCGATTGGGTTTGCTGAATGCATAATTGCAGACGAGGGAATTCGGTCTGCGTGCGTTTTAATGTGTCGCATTCTAAGCTGATTCATTTCTTGGAGCAGCTTTCATCTGAAAACTGATTCCAGCGCAGTATCGTTCTCGTCGGGCGAAACGGACACTTCATCTCGCTGCTGCAAGGATCACGATTTCAGCAGCCGCTCCTGATATGTGTGATCATCCATCAAGCGTGCTGAGAAATGTGTGTTTGCAGCTCAGCCGGGGGCAAAAGGTCACTACTTATTCTCCTTTTCTGTACAGGCAAGACCACGGCAGATCTGGATGACCCTGTGGTGACGGTTCATCAGAGTATAGGTGAAGCGAAAGAGCAGTTCTACTACGAGCGGACGGTGTTCCTGCGTTGTGTGGCCAACTCCAACCCTCCCATCCGCTACAGCTGGCACCGAGGACGAGACGTTCTCTCGCAAGGATCCGATAAAGGTGTGGAGATCTACGAGCCCTTCTTTACCCAGGGGGAAACGAAGATCCTGAAGTTGAAGAACCTGAGACCCAAGGACTACGCCAACTACAGCTGCATTGCCTCCGTCAGGAACGTGTGCGGCATCGCTGACCGCAAAGTCGTCTTCAGACTGACCAATAAAACAGCTCCAGCCTCCATAAAGCTGTTGGTGGAGGATCCGATTGTGGTGAATCCAGGGCAGACGGTGTCTCTGGTGTGCATCACCACAGGAGGAGAGCCAACGCCGACCCTCACCTGGACAAGCAGCTCCGGTTCGCTGCCAGAGAAGAGTGTGGTGAAGGACGGCACCCTCACGCTGCCCGCCGTCTCCTCCGAGGACGCCGGCGTCTACAGCTGCGTCGCCAGCAACAACGTGGGCAACCCGGCCAAGAAGTCCACTACCATCATCGTTCGAGCATTGAAGAAGGGTCGTTTCTGGATCACCCCTGACCCGTACCACAACGACGACAACATCCAGATCGGCCGCGAGGTGAAGATCTCCTGCCAGGTCGAAGCCACGCCGCCCGAGGAGCTCCAGTTCAGCTGGCTGAAGAACGGCCGGGCCTTACGCAGCTCCGAACGGATGGTCATCACCCAGACCGATCCCGACATCTCGCCCGGAACCACCAATCTGGACATCATCGACCTCAAGTTCACAGACTTCGGCACGTACACCTGTGTGGCGTCGCTGCGAGGCGGCGGGATCCCTGAGATCAGCATCGACGTCAACATCTCGTCCACCACTGAGCAGCGGGACTCTGACCGGATCGATACCGGACCCGCCCTCGGTCATCAGGACGTCCAGCCACTGCTGAATGTGATTCGCTCGCTGTTCCCTCATGATGCTCCTAATGGTTTATTCACGAGGAGTGTGCCGAGATTTTCCCCTCTGATAGCAGAAGGATTAAATAATGACGAAGCGTGTGGAATGACGAGCAGCCTCGTTCTCATTCGAAGAGTTCCCCCGAACCTGACCGTGCCGCGGGGCAAGTCCCCGCTGGTGGTGCGGGAGGGCGAGACGGTGGAGCTGGAGTGCCTTGTTTCAGGGAAACCCAAGCCCATCATCCTGTGGTCGCGAGCAGATAAAGAGGCACCCATGCCGGATGGTAGCATGCAGATGGAGAGTTATGACGGTGTGCTGCGGATTGTCAACGTGTCGCGCGAGATGAGCGGATCCTACCGCTGCCAGACCAGCCAGTACAACGGCTTCAACGTCAAGCCCAGAGAGGCCGTGGTCGAGCTCATCGTGCAGTACCCTCCAGCGGTGGAGCCGGTGTGGCAGGAGGTCCGTCAGGGTTTGGGTCGGCCGGTGGCTTTGAACTGCCGCGTTCTGCGGGCGCATCCGTCACGTGTGCTGCGGTACGAATGGAGGCTGGGCTCACGACTGCTCCACGCCGGACACTTCGACTCACGGGACGAGACGGACTACACCATACGCAGCCTCGCGCGAGAGGGCTACGGCGAGTACACCTGTGACATCATCAACGAGGCGGGGCCGGGACGCTGCAACTTCCTGGTCACCGGAGGTGTCGTTCAGAGATGTTCAGAGATATCATGTGTTCTTGGATCATGTGGTTTGGCTCAGATCTTCTGTCAGGAGGTTTATCTCGAGTTTTGGGACTGGAAGCAGTGCGTTTTAAGTCGAGATCACTGCAAACACCCTCCAGCTTCATTCCCGCAGGTCTGGAGAGCAAGGCTGAATAATAGAGTTTGTTTTCAGAGCCTAAAGTGGGCCCGATTCACCCAGACACGGATCTCGCGCTGCTCAGAAAGGGAAACGGGATTTGACATCCTGACGGGGCAGCAGCGCTGGTGGGAGCAGGAGATTCCTGTGGAGGGAAATATCCAGAAGGGAGAACTGATCACACACAACCTGACGGAGCTCATCAGACCCGAGGCCTACGTGGTCCGACTCACACCGATCACACGCTTCGGAGAGGGAGATTCAACCACCAGGATCGTCACGTACAGCGCTCCAGTCAATCCTCATCTGAGAGAGTTTCACTGCAGCTTTGAAGAGGAGCCCGTTTGCATGTTCACTCAGGACAAGAACGACGACTTTGATTGGACGAGACACAGCGCCGCCACCCGCGACACTAAATACACCCCAAACACGGGTCCCAGCGCGGATCGGGCCGGCTCAAAGCAGGGTTTCTACATGTACATTGAGACCTCCAGACCTCGTAAAGAGGGCGACACGGCTCGTCTGTTGAGCCCCACGTTTAACGTCGCCCCCAAGAATCCCTACAGCATCACCAGCCCTCCGGCGTACTGCTTCACCTTCTACTATCACATGTACGGCAAACACATCGGTAAGATGACGTCCACGTGCACTCGTGTAGCAGATGTGCTAAAACTCTCTCGCATTATCACTTCAACTGACGAGGATCTACAGCTGCTGACAGGTTCCTGCATTAGCATGACGGGTTGATGTTAGCAGGTCATGTCAAACCCACAGACTCCAGCGCTCTATTACTGACACGTGTTCCTCTCAGATGTGATGATTTTGTCGTGCGCTCAAACCTCAAACTCTCGACTTCGTAAATGATTGAAAATTTCCACTGTTGTTGACCATTAAAAAACAGTTTATTGAACACACTTTGACCCCCTATGTCGGGGCATGTTGTCACACTTGTTCAAATCCAGTTTCATTATAACTAGATGGTTGCAGGGTTATTATAGTTAACTAAAACTAAAACCATAAAAAAAACCATTTTGTTGCTTGAAATAAAATAAGCATTAACAGAAGTAAAAAATAAAAATAAAAAACTTTATTTTATTTGAGCTAGTAGCCATGATAATATTATTTTCATTAAGTTTAACTTGATGTACTGAAATAACTAAAACTAAAAAAAATGATAAAAATTATAAAAATATTTCTATTTAGCTTTAATTTATTTTTATTTCAGTTTTATTAATTTAGACAGATTCAACTGTAACTTATTTTACACACTCACACACACACTCTCTCTCTCACACACACTCGCACGCACACACACACACACACACACTCACACACACTCTCACACACTCTCACACACACACTCTCACACTCACACACACACACTCTCTCTCTCACACACACTCACACACACTCTCTCTCTCACACACACACACACTCACACACACTCTCTCTCACACACACACACACACTCACACACACGCACGCACACACACACACACACACACTCTCTCTCACACACACACTGTCACACTCACACACACACACTCGCGCACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACAAACACACACACTCGCACACACACACACACACTCTCACACTCACACACTCTCTCTCTCTTTCTCTCTCTCTCACACACACACTCACACACACACACACACACACACTCACACACACACACACACACACTCACACACACACACACACACTCTCTCTCTCTCTCACACACACACACACACACACACACACTCACAGAAGCCGCAGTACCTGCTCGGAGGTCACAGCTGATTAATGAGACTCACTTCAAAGTTTGCCTTTGAGTTCCTTCTCTTTCGTTTGTTTGCTGGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178194 lncRNA downstream 39749 8782291 ~ 8782514 (-) True G156949
TU178192 lncRNA downstream 41187 8780763 ~ 8781076 (-) True G156947
TU178075 lncRNA downstream 61049 8760745 ~ 8761214 (-) True G156831
TU178080 lncRNA downstream 254345 8567624 ~ 8567918 (-) True CI01000029_08568672_08576837
TU178081 lncRNA downstream 254830 8566372 ~ 8567433 (-) False CI01000029_08568672_08576837
TU178236 lncRNA upstream 61383 8965942 ~ 9012282 (-) True G156983
TU178068 lncRNA upstream 154037 9058596 ~ 9061341 (-) True G156824
TU178086 lncRNA upstream 191838 9096397 ~ 9101806 (-) True G156842
TU178260 lncRNA upstream 199900 9104459 ~ 9104801 (-) True G157007
TU178263 lncRNA upstream 202648 9107207 ~ 9107759 (-) True G157010
CI01000029_08754053_08755396.mRNA mRNA downstream 66683 8753942 ~ 8755580 (-) True CI01000029_08754053_08755396
CI01000029_08732049_08738371.mRNA mRNA downstream 83892 8731832 ~ 8738371 (-) True CI01000029_08732049_08738371
CI01000029_08722756_08730839.mRNA mRNA downstream 90700 8722499 ~ 8731563 (-) True CI01000029_08722756_08730839
CI01000029_08713541_08717320.mRNA mRNA downstream 104943 8713188 ~ 8717320 (-) True CI01000029_08713541_08717320
CI01000029_08690880_08711534.mRNA mRNA downstream 110344 8690325 ~ 8711919 (-) True CI01000029_08690880_08711534
CI01000029_08925803_08926581.mRNA mRNA upstream 21070 8925629 ~ 8926581 (-) True CI01000029_08925803_08926581
CI01000029_08974137_08982053.mRNA mRNA upstream 68200 8972759 ~ 8982107 (-) True CI01000029_08974137_08982053
CI01000029_09062820_09065407.mRNA mRNA upstream 158217 9062776 ~ 9065407 (-) True CI01000029_09062820_09065407
CI01000029_09067123_09072979.mRNA mRNA upstream 162206 9066765 ~ 9072979 (-) True CI01000029_09067123_09072979
CI01000029_09114660_09118056.mRNA mRNA upstream 209995 9114554 ~ 9118328 (-) True CI01000029_09114660_09118056
TU177684 other downstream 1452716 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1452716 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1651312 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3834838 4986108 ~ 4987425 (-) False G154415

Expression Profile