RNA id: TU177702


Basic Information

Item Value
RNA id TU177702
length 695
lncRNA type read_through
GC content 0.40
exon number 2
gene id G156504
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7503908 ~ 7514798 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACTTACGGACATGTTCTTAAATGGGTTTCCACACTTTTCCCATCCTAACCAGTACTCATTCATGTCTTGCAGTGTCACTGAGGACAGCTTCAGAAGCGTGAAATGTTTACCCTGAAAGCTGAGGAGGTCTTCTTCACAGATGCTCTTCACTTTGTTGCGAGAGAGATCGAGCACATGGAATCTCCTCATATTTAAAAAGAACAATGCTGGCTGGATTCTTTTAATGTTGTTTTCACGTAAGACAAGCATCTCAAGAGACACCAGAGGTTTGAGGAAGTCACCAGACAAAATAGTATCATCTAAACTGCACTGAGTGAGAGTGAGAATCTCAAGGTTGAATAATCCATTAAATGCCCCTGTCTCTATTTGCAAGAAGTGGTTGTAGTCTAACTTAAGTAATATTAGATTGGAGAGTCTTCTAAATGTGTTGTTTCTGATCACAAGTCCTGTTGTTTGTTGCTCCAGTTTAAGGACTTGTAGACCTTCAAGACGAGAAAAGGATGTTTCGTTGAGTTCAGCAATGCTGTTAAAATTCAGATCCACATAATTGATGTACGTGGGAAGCTCTGGCACCTGATGAAGACCTCTAGATATGCAGAAGGCTGCATAGCCATTAACTGAACACACAGAGGTGCATTTCACAACTTCAGTGTTAATGCACAATCCAAAGAGGATCAGAATAAATGTAAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177705 lncRNA downstream 920 7500335 ~ 7502988 (-) True G156507
TU177819 lncRNA downstream 16666 7487015 ~ 7487242 (-) True G156615
TU177704 lncRNA downstream 35719 7465871 ~ 7468189 (-) True CI01000029_07468989_07470230
TU177811 lncRNA downstream 56112 7447553 ~ 7447796 (-) True G156607
TU177688 lncRNA downstream 131987 7366327 ~ 7371921 (-) True G156495
TU177703 lncRNA upstream 76259 7591057 ~ 7592028 (-) True CI01000029_07592969_07600728
TU177839 lncRNA upstream 126238 7641036 ~ 7698876 (-) True G156628
TU177844 lncRNA upstream 128485 7643283 ~ 7653741 (-) True G156633
TU177873 lncRNA upstream 203915 7718713 ~ 7719037 (-) True G156659
TU177875 lncRNA upstream 214168 7728966 ~ 7729205 (-) True G156661
CI01000029_07468989_07470230.mRNA mRNA downstream 32419 7467952 ~ 7471489 (-) False CI01000029_07468989_07470230
CI01000029_07455468_07464461.mRNA mRNA downstream 39443 7455360 ~ 7464465 (-) True CI01000029_07455468_07464461
CI01000029_07435007_07443830.mRNA mRNA downstream 60078 7434940 ~ 7443830 (-) True CI01000029_07435007_07443830
CI01000029_07419676_07421496.mRNA mRNA downstream 81240 7419635 ~ 7422668 (-) True CI01000029_07419676_07421496
CI01000029_07405933_07416452.mRNA mRNA downstream 86956 7405543 ~ 7416952 (-) True CI01000029_07405933_07416452
CI01000029_07518076_07533630.mRNA mRNA upstream 2480 7517278 ~ 7533858 (-) True CI01000029_07518076_07533630
CI01000029_07580435_07584666.mRNA mRNA upstream 65510 7580308 ~ 7585439 (-) True CI01000029_07580435_07584666
CI01000029_07592969_07600728.mRNA mRNA upstream 77161 7591959 ~ 7600728 (-) False CI01000029_07592969_07600728
CI01000029_07615776_07640353.mRNA mRNA upstream 100402 7615200 ~ 7640353 (-) True CI01000029_07615776_07640353
CI01000029_07810274_07813211.mRNA mRNA upstream 295180 7809978 ~ 7813211 (-) True CI01000029_07810274_07813211
TU177684 other downstream 134361 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 134361 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 332957 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 2516483 4986108 ~ 4987425 (-) False G154415

Expression Profile