RNA id: TU177844


Basic Information

Item Value
RNA id TU177844
length 225
lncRNA type read_through
GC content 0.43
exon number 2
gene id G156633
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7643283 ~ 7653741 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGATACTGGATGTAAACAGGAATTTGAAGCCGTTCCTGACTTGTGCTGTCATCCTCTGGAGCATCATGTGCGATATTGAGCTCAGCCTCTAGATCATCCATAGCTCACTGCTTTACGAATTGCTTTCCTCTCAAGAATATTATGAAGAACGTGTGAATAAAATGCATTATACTTCTCAATGCACTTTACGATCGCACGTCTCAACGCGGGCGTGTGAACAAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177703 lncRNA downstream 51255 7591057 ~ 7592028 (-) True CI01000029_07592969_07600728
TU177702 lncRNA downstream 128485 7503908 ~ 7514798 (-) True G156504
TU177705 lncRNA downstream 140295 7500335 ~ 7502988 (-) True G156507
TU177819 lncRNA downstream 156041 7487015 ~ 7487242 (-) True G156615
TU177704 lncRNA downstream 175094 7465871 ~ 7468189 (-) True CI01000029_07468989_07470230
TU177873 lncRNA upstream 64972 7718713 ~ 7719037 (-) True G156659
TU177875 lncRNA upstream 75225 7728966 ~ 7729205 (-) True G156661
TU177964 lncRNA upstream 276018 7929759 ~ 7930343 (-) True G156736
TU177932 lncRNA upstream 387006 8040747 ~ 8043248 (-) False CI01000029_08041274_08048935
TU177944 lncRNA upstream 389563 8043304 ~ 8047097 (-) True G156716
CI01000029_07615776_07640353.mRNA mRNA downstream 2930 7615200 ~ 7640353 (-) True CI01000029_07615776_07640353
CI01000029_07592969_07600728.mRNA mRNA downstream 42555 7591959 ~ 7600728 (-) False CI01000029_07592969_07600728
CI01000029_07580435_07584666.mRNA mRNA downstream 57844 7580308 ~ 7585439 (-) True CI01000029_07580435_07584666
CI01000029_07518076_07533630.mRNA mRNA downstream 109425 7517278 ~ 7533858 (-) True CI01000029_07518076_07533630
CI01000029_07507652_07510065.mRNA mRNA downstream 133218 7507552 ~ 7510065 (-) True CI01000029_07507652_07510065
CI01000029_07810274_07813211.mRNA mRNA upstream 156237 7809978 ~ 7813211 (-) True CI01000029_07810274_07813211
CI01000029_07820703_07833528.mRNA mRNA upstream 166934 7820675 ~ 7834085 (-) True CI01000029_07820703_07833528
CI01000029_07836385_07847829.mRNA mRNA upstream 182506 7836247 ~ 7847829 (-) True CI01000029_07836385_07847829
CI01000029_07850412_07853905.mRNA mRNA upstream 196439 7850180 ~ 7854017 (-) True CI01000029_07850412_07853905
CI01000029_07946659_07953611.mRNA mRNA upstream 292661 7946402 ~ 7953611 (-) True CI01000029_07946659_07953611
TU177684 other downstream 273736 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 273736 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 472332 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 2655858 4986108 ~ 4987425 (-) False G154415

Expression Profile