RNA id: TU178096


Basic Information

Item Value
RNA id TU178096
length 238
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G156852
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8271449 ~ 8271686 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTGTTCTAATGAGATCATCAAAACGAGAAATGTCGATTCTTGCAGAACTTCAGTCATGTGACTGATGATTTTATTACATCATCAAGGTCAAGGCCCAGTATAGGCTCCACAAGACCAAAATAGCAGCAGCTCGTGGTCTTAAAGTTTATGGATATACAGTCAGGACTCGTCATTTTTAGACATTTTTATGAGTCTTTCTCTTTACCTGGAGCTGGTCAGAGGTCATGAGGCACTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178095 lncRNA downstream 428 8270752 ~ 8271021 (-) True G156851
TU178094 lncRNA downstream 3787 8267400 ~ 8267662 (-) True G156850
TU177933 lncRNA downstream 34157 8236195 ~ 8237292 (-) True CI01000029_08237701_08245368
TU177946 lncRNA downstream 44881 8220390 ~ 8226568 (-) True G156718
TU177944 lncRNA downstream 224352 8043304 ~ 8047097 (-) True G156716
TU178098 lncRNA upstream 1585 8273271 ~ 8273498 (-) True G156854
TU178139 lncRNA upstream 87632 8359318 ~ 8359524 (-) True G156895
TU178140 lncRNA upstream 88264 8359950 ~ 8360239 (-) True G156896
TU178141 lncRNA upstream 89118 8360804 ~ 8361106 (-) True G156897
TU178142 lncRNA upstream 89469 8361155 ~ 8361398 (-) True G156898
CI01000029_08250264_08262665.mRNA mRNA downstream 8784 8250249 ~ 8262665 (-) True CI01000029_08250264_08262665
CI01000029_08237701_08245368.mRNA mRNA downstream 26081 8236917 ~ 8245368 (-) False CI01000029_08237701_08245368
CI01000029_08229070_08234969.mRNA mRNA downstream 36480 8228965 ~ 8234969 (-) True CI01000029_08229070_08234969
CI01000029_08205518_08214627.mRNA mRNA downstream 56822 8205470 ~ 8214627 (-) True CI01000029_08205518_08214627
CI01000029_08185095_08190376.mRNA mRNA downstream 81073 8185029 ~ 8190376 (-) True CI01000029_08185095_08190376
CI01000029_08384203_08407906.mRNA mRNA upstream 111939 8383625 ~ 8407906 (-) False CI01000029_08384203_08407906
CI01000029_08463083_08479077.mRNA mRNA upstream 191306 8462992 ~ 8479190 (-) True CI01000029_08463083_08479077
CI01000029_08568672_08576837.mRNA mRNA upstream 295345 8567031 ~ 8577143 (-) False CI01000029_08568672_08576837
CI01000029_08606896_08609369.mRNA mRNA upstream 333820 8605506 ~ 8610176 (-) True CI01000029_08606896_08609369
CI01000029_08690880_08711534.mRNA mRNA upstream 418639 8690325 ~ 8711919 (-) True CI01000029_08690880_08711534
TU177684 other downstream 901902 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 901902 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1100498 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3284024 4986108 ~ 4987425 (-) False G154415

Expression Profile