RNA id: TU178075


Basic Information

Item Value
RNA id TU178075
length 341
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G156831
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8760745 ~ 8761214 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAAAGAAAACATGTTTATTGAACTTTCCAATGTAACTTCATGACGTCAGGTTGGATGTTGATTCCTCATCATGGAAGTTCAGCTGTCCACAGGTTTAGTCCAGCTGACGAAGCCGATATCTTTAGCGTACTGTCTGAAGCACTGACGGCACATGTTGAGTCCGTATTTACGGATCAGACCGTGTCTGTTTGAGCAAACTCGGCTGGAAAAACAACAACACAACAGGTTAGAATAGAAATGCATGCAAATGCACAGTAACGTATTAAAATTATAAAATAATTACCATGCATTACTTTGACAGATGACAAAATAAAGCCAAAACTGATCTACATATACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178080 lncRNA downstream 192827 8567624 ~ 8567918 (-) True CI01000029_08568672_08576837
TU178081 lncRNA downstream 193312 8566372 ~ 8567433 (-) False CI01000029_08568672_08576837
TU178164 lncRNA downstream 243375 8517117 ~ 8517370 (-) True G156919
TU178158 lncRNA downstream 257566 8498258 ~ 8503179 (-) True G156913
TU177945 lncRNA downstream 376090 8382870 ~ 8384655 (-) True CI01000029_08384203_08407906
TU178192 lncRNA upstream 19549 8780763 ~ 8781076 (-) True G156947
TU178194 lncRNA upstream 21077 8782291 ~ 8782514 (-) True G156949
TU178210 lncRNA upstream 88911 8850125 ~ 8850659 (-) False G156965
TU178211 lncRNA upstream 88911 8850125 ~ 8850686 (-) True G156965
TU178236 lncRNA upstream 204728 8965942 ~ 9012282 (-) True G156983
CI01000029_08754053_08755396.mRNA mRNA downstream 5165 8753942 ~ 8755580 (-) True CI01000029_08754053_08755396
CI01000029_08732049_08738371.mRNA mRNA downstream 22374 8731832 ~ 8738371 (-) True CI01000029_08732049_08738371
CI01000029_08722756_08730839.mRNA mRNA downstream 29182 8722499 ~ 8731563 (-) True CI01000029_08722756_08730839
CI01000029_08713541_08717320.mRNA mRNA downstream 43425 8713188 ~ 8717320 (-) True CI01000029_08713541_08717320
CI01000029_08690880_08711534.mRNA mRNA downstream 48826 8690325 ~ 8711919 (-) True CI01000029_08690880_08711534
CI01000029_08823850_08904325.mRNA mRNA upstream 61049 8822263 ~ 8904559 (-) True CI01000029_08823850_08904325
CI01000029_08925803_08926581.mRNA mRNA upstream 164415 8925629 ~ 8926581 (-) True CI01000029_08925803_08926581
CI01000029_08974137_08982053.mRNA mRNA upstream 211545 8972759 ~ 8982107 (-) True CI01000029_08974137_08982053
CI01000029_09062820_09065407.mRNA mRNA upstream 301562 9062776 ~ 9065407 (-) True CI01000029_09062820_09065407
CI01000029_09067123_09072979.mRNA mRNA upstream 305551 9066765 ~ 9072979 (-) True CI01000029_09067123_09072979
TU177684 other downstream 1391198 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1391198 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1589794 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3773320 4986108 ~ 4987425 (-) False G154415

Expression Profile