RNA id: TU178192


Basic Information

Item Value
RNA id TU178192
length 314
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G156947
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8780763 ~ 8781076 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAACAGTGGACACGTGAGCATCAGAACTGGACCACAGAGCAATGGAAGAAGGTGTCCTGGTCTGATGAATCACGTTTTCTTTTACATCACGTGGATGGCCGGGTGCGTGTGCGTCGCTTACCTGGGGAACACATGACACCAGGATGCACTATGGGAAGAAGGCAAGCCGGAGGCAGTGTGATGCTTTGGGCAATGTTCTGCTGGGAAACCTTGGGTCCTGCCATCCATGTGGATGTTACTTTGACACGTACCACCTACCTAAGCATTGTTGCAGACCATGTACACCCTTTCATGGAAACGGTATTCCCTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178075 lncRNA downstream 19549 8760745 ~ 8761214 (-) True G156831
TU178080 lncRNA downstream 212845 8567624 ~ 8567918 (-) True CI01000029_08568672_08576837
TU178081 lncRNA downstream 213330 8566372 ~ 8567433 (-) False CI01000029_08568672_08576837
TU178164 lncRNA downstream 263393 8517117 ~ 8517370 (-) True G156919
TU178158 lncRNA downstream 277584 8498258 ~ 8503179 (-) True G156913
TU178194 lncRNA upstream 1215 8782291 ~ 8782514 (-) True G156949
TU178210 lncRNA upstream 69049 8850125 ~ 8850659 (-) False G156965
TU178211 lncRNA upstream 69049 8850125 ~ 8850686 (-) True G156965
TU178236 lncRNA upstream 184866 8965942 ~ 9012282 (-) True G156983
TU178068 lncRNA upstream 277520 9058596 ~ 9061341 (-) True G156824
CI01000029_08754053_08755396.mRNA mRNA downstream 25183 8753942 ~ 8755580 (-) True CI01000029_08754053_08755396
CI01000029_08732049_08738371.mRNA mRNA downstream 42392 8731832 ~ 8738371 (-) True CI01000029_08732049_08738371
CI01000029_08722756_08730839.mRNA mRNA downstream 49200 8722499 ~ 8731563 (-) True CI01000029_08722756_08730839
CI01000029_08713541_08717320.mRNA mRNA downstream 63443 8713188 ~ 8717320 (-) True CI01000029_08713541_08717320
CI01000029_08690880_08711534.mRNA mRNA downstream 68844 8690325 ~ 8711919 (-) True CI01000029_08690880_08711534
CI01000029_08823850_08904325.mRNA mRNA upstream 41187 8822263 ~ 8904559 (-) True CI01000029_08823850_08904325
CI01000029_08925803_08926581.mRNA mRNA upstream 144553 8925629 ~ 8926581 (-) True CI01000029_08925803_08926581
CI01000029_08974137_08982053.mRNA mRNA upstream 191683 8972759 ~ 8982107 (-) True CI01000029_08974137_08982053
CI01000029_09062820_09065407.mRNA mRNA upstream 281700 9062776 ~ 9065407 (-) True CI01000029_09062820_09065407
CI01000029_09067123_09072979.mRNA mRNA upstream 285689 9066765 ~ 9072979 (-) True CI01000029_09067123_09072979
TU177684 other downstream 1411216 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1411216 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1609812 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3793338 4986108 ~ 4987425 (-) False G154415

Expression Profile