RNA id: TU178236


Basic Information

Item Value
RNA id TU178236
length 1341
lncRNA type read_through
GC content 0.34
exon number 2
gene id G156983
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8965942 ~ 9012282 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTTGAGTTGGAATTTATGTATGAATGGCAAATAAGTTTATTAAGTTAAAACTGTGTAATGCAAATGCATGGAAATTTTATGTGCAATTTAGTGCTGTCAGTCGATTAATTGCGATTAATCAAGTTAATTTTTTTTAATCACAATTAAAAACACTTAAGTTTTTATACGCTTTTAATATATTTTATAATGTAATAATTTCACAGTTAATCTCCAAACTAAAACAACATAAAGACAGTATATTTTAAATACTTGTTTAATCTTATGAATGAAGGCCAGTATCACTGATACTAATAGCCTACAGCTACTGATGTCTCCATGAAATTGATTTTTTTCCCCAATTGTAAACATGAATTATAGCCATTCAACATTACAGTGGAATTGAAAGCTATCATTTCTTACATTTATTAGGCTTCAAAAATTCTCAGACAAAAGAAAAATTCTCTTTTGGCGCGCTTAAATGATTTAAATGAATAAGAGCGTGATCATATTGTAATGCTAGCCAAAGGATGACAGAAAAAAAAAAAAAAAACAGATGCTGCATTAATATTTTTAATGAGTTAAACTGGAAAAAAATTAATCGCATGCGTTAATGCGTTAATGTTGACAGCACTAGTGCAATTCAAATACATAAATCATAAATTAAGGTCTACATTCCCAACATCAAACACTCGAGCCGTTTCAACTATGATGACATCATATACTCAAATAAATATGAAGATAGCATTATTATATGGAATTGTATATAATACATACATGTGCATTTAGATATGTTTCTGTCTTCAAATGTACCTATTTTAGGCAAACTTCAGTGCTGATGGGTAATTTTCCCCATCCACTAGTGAAGTGATATATCGATGCACACTTGGAGCCCATTTAAGTCCACTTCACAGTGTGCAGTGGGGTGATTGGAACACACTCTGAGTATGTGGGGATCTGTCAATCAAACCCCAGCTTGTGTTAATGCACAGTGTTTGAACAGACAGTGTAATGTGTGCGACTTGACGATGTGTTATGGATCGCAGTCTAAACATGATTATGACTGTGGTTGACGTGATGTGACACGCAGGATACTGTATTTACTGTTGTCAGTATCTGCTGGTTGCATTTACTTTAGTTAACTCTTGTTGTTCTGCCTAATGCTGTTCGGAAAGATCCTGTTTACAAGTGTTGAAGTCGACGATGAGGTTTTGATATTTAGGGCCCAAGCCTTGAAAGGGCGAATGCCCTATTGTTTTCCTTTAGGTAAATTTTTTTTTGACCTTTCTGGCACTTTTGGGTCCCTTAACATGCTCAAAAACTCTGAAACTTTGCACACACATAGTTGTCATGTTGTCATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178211 lncRNA downstream 115256 8850125 ~ 8850686 (-) True G156965
TU178210 lncRNA downstream 115283 8850125 ~ 8850659 (-) False G156965
TU178194 lncRNA downstream 183428 8782291 ~ 8782514 (-) True G156949
TU178192 lncRNA downstream 184866 8780763 ~ 8781076 (-) True G156947
TU178075 lncRNA downstream 204728 8760745 ~ 8761214 (-) True G156831
TU178068 lncRNA upstream 46314 9058596 ~ 9061341 (-) True G156824
TU178086 lncRNA upstream 84115 9096397 ~ 9101806 (-) True G156842
TU178260 lncRNA upstream 92177 9104459 ~ 9104801 (-) True G157007
TU178263 lncRNA upstream 94925 9107207 ~ 9107759 (-) True G157010
TU178266 lncRNA upstream 109929 9122211 ~ 9122435 (-) True G157013
CI01000029_08925803_08926581.mRNA mRNA downstream 39361 8925629 ~ 8926581 (-) True CI01000029_08925803_08926581
CI01000029_08823850_08904325.mRNA mRNA downstream 61383 8822263 ~ 8904559 (-) True CI01000029_08823850_08904325
CI01000029_08754053_08755396.mRNA mRNA downstream 210362 8753942 ~ 8755580 (-) True CI01000029_08754053_08755396
CI01000029_08732049_08738371.mRNA mRNA downstream 227571 8731832 ~ 8738371 (-) True CI01000029_08732049_08738371
CI01000029_08722756_08730839.mRNA mRNA downstream 234379 8722499 ~ 8731563 (-) True CI01000029_08722756_08730839
CI01000029_09062820_09065407.mRNA mRNA upstream 50494 9062776 ~ 9065407 (-) True CI01000029_09062820_09065407
CI01000029_09067123_09072979.mRNA mRNA upstream 54483 9066765 ~ 9072979 (-) True CI01000029_09067123_09072979
CI01000029_09114660_09118056.mRNA mRNA upstream 102272 9114554 ~ 9118328 (-) True CI01000029_09114660_09118056
CI01000029_09173596_09181048.mRNA mRNA upstream 160923 9173205 ~ 9181141 (-) True CI01000029_09173596_09181048
CI01000029_09212269_09216732.mRNA mRNA upstream 198545 9210827 ~ 9216732 (-) True CI01000029_09212269_09216732
TU177684 other downstream 1596395 7366327 ~ 7369547 (-) False G156495
TU177685 other downstream 1596395 7366327 ~ 7369547 (-) False G156495
TU177741 other downstream 1794991 7170367 ~ 7170951 (-) False G156542
TU175317 other downstream 3978517 4986108 ~ 4987425 (-) False G154415

Expression Profile