RNA id: TU180141


Basic Information

Item Value
RNA id TU180141
length 253
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G158660
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2876743 ~ 2876995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCACCCACAAGACCGTGAGCTGCCTGTCCATGCCTGTTCAGCAAAAACCAATGGTAAATAAAATAGCCTATATCATAATGTTAGGTGTAGTGCAAAGACCACTTATTTAGATTTTAAAAATATATTTCTCGTTAGTTTATTAGTACATTGTTGCCTTGCATTCATGTACATTAAGGTGCATGATATCATTAGAGCAGTTTACAATGTTGTTTCATCGCTCAAACAGGTTTTAAAATATTGCAGCGTCTGTGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180063 lncRNA upstream 169582 2706948 ~ 2707161 (+) True G158585
TU180058 lncRNA upstream 172702 2703766 ~ 2704041 (+) True CI01000030_02705058_02731134
TU179867 lncRNA upstream 186402 2687543 ~ 2690341 (+) True G158398
TU180040 lncRNA upstream 218222 2658262 ~ 2658521 (+) True G158567
TU180039 lncRNA upstream 219556 2656973 ~ 2657187 (+) True G158566
TU180145 lncRNA downstream 4846 2881841 ~ 2882156 (+) True G158664
TU180158 lncRNA downstream 31300 2908295 ~ 2908516 (+) True G158676
TU180163 lncRNA downstream 91662 2968657 ~ 2970230 (+) True G158681
TU180251 lncRNA downstream 272803 3149798 ~ 3150010 (+) True CI01000030_03139836_03149991
TU180259 lncRNA downstream 286248 3163243 ~ 3163472 (+) True G158767
CI01000030_02843446_02856037.mRNA mRNA upstream 20527 2843446 ~ 2856216 (+) True CI01000030_02843446_02856037
CI01000030_02705058_02731134.mRNA mRNA upstream 145592 2701811 ~ 2731151 (+) False CI01000030_02705058_02731134
CI01000030_02678940_02684491.mRNA mRNA upstream 192152 2678940 ~ 2684591 (+) True CI01000030_02678940_02684491
CI01000030_02641511_02650047.mRNA mRNA upstream 226204 2641045 ~ 2650539 (+) True CI01000030_02641511_02650047
CI01000030_02620111_02632697.mRNA mRNA upstream 244021 2620111 ~ 2632722 (+) True CI01000030_02620111_02632697
CI01000030_02891265_02897170.mRNA mRNA downstream 14116 2891111 ~ 2898442 (+) True CI01000030_02891265_02897170
CI01000030_02911153_02916952.mRNA mRNA downstream 32405 2909400 ~ 2916952 (+) True CI01000030_02911153_02916952
CI01000030_02919390_02954905.mRNA mRNA downstream 42395 2919390 ~ 2955425 (+) True CI01000030_02919390_02954905
CI01000030_03018776_03042194.mRNA mRNA downstream 141781 3018776 ~ 3042194 (+) False CI01000030_03018776_03042194
CI01000030_03058744_03059657.mRNA mRNA downstream 178876 3055871 ~ 3059667 (+) True CI01000030_03058744_03059657
TU179886 other upstream 262450 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 594373 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 1238516 1636867 ~ 1638227 (+) True G157726
TU178650 other upstream 1870056 1003889 ~ 1006687 (+) False G157332
TU180187 other downstream 136461 3013456 ~ 3013518 (+) True G158703
TU181300 other downstream 1554805 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 1639783 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 4322940 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4977090 7854085 ~ 7859348 (+) True G161901

Expression Profile