RNA id: TU183610


Basic Information

Item Value
RNA id TU183610
length 237
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G161710
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7127636 ~ 7127872 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTAACACAGCTATTTGTAATATCCATGGTATCCAGGGGACGTGCCTGTGCACTGTAGCGTTGCATGCCTAGCATGGTTGCCCTTTTAATTCGCAGGTGTGCCCAGGTGGGGCATCTACTGGCTTTCTGCACACACTTGATGATTAGACATATGATTATGTATTGTGGAAGTGAAGAAATGAAGTACACGGAAAGTTATACGTACTGTAAGTGACATGTTAGTGCATGTTCTGGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183587 lncRNA upstream 103040 7024376 ~ 7024596 (+) True G161689
TU183551 lncRNA upstream 106914 7020350 ~ 7020722 (+) True G161659
TU183555 lncRNA upstream 107406 7019972 ~ 7020230 (+) True G161663
TU183559 lncRNA upstream 108882 7016627 ~ 7018754 (+) True G161667
TU183541 lncRNA upstream 117368 7009823 ~ 7010268 (+) True G161649
TU183521 lncRNA downstream 53819 7181691 ~ 7183082 (+) True G161629
TU183520 lncRNA downstream 184374 7312246 ~ 7319998 (+) True G161628
TU183545 lncRNA downstream 192645 7320517 ~ 7320880 (+) True G161653
TU183561 lncRNA downstream 199509 7327381 ~ 7328897 (+) True G161669
TU183529 lncRNA downstream 214097 7341969 ~ 7342504 (+) True G161637
CI01000030_07090203_07116961.mRNA mRNA upstream 10481 7090203 ~ 7117155 (+) True CI01000030_07090203_07116961
CI01000030_07035634_07056907.mRNA mRNA upstream 69356 7035634 ~ 7058280 (+) True CI01000030_07035634_07056907
CI01000030_06854630_06884768.mRNA mRNA upstream 242541 6852912 ~ 6885095 (+) False CI01000030_06854630_06884768
CI01000030_06807723_06810172.mRNA mRNA upstream 317139 6807723 ~ 6810497 (+) True CI01000030_06807723_06810172
CI01000030_06712812_06713477.mRNA mRNA upstream 414102 6712812 ~ 6713534 (+) True CI01000030_06712812_06713477
CI01000030_07132933_07144801.mRNA mRNA downstream 4683 7132555 ~ 7144977 (+) True CI01000030_07132933_07144801
CI01000030_07149325_07150136.mRNA mRNA downstream 21453 7149325 ~ 7150210 (+) True CI01000030_07149325_07150136
CI01000030_07179638_07180532.mRNA mRNA downstream 51677 7179549 ~ 7180616 (+) True CI01000030_07179638_07180532
CI01000030_07186693_07197825.mRNA mRNA downstream 58821 7186693 ~ 7197825 (+) True CI01000030_07186693_07197825
CI01000030_07200104_07202258.mRNA mRNA downstream 72232 7200104 ~ 7202314 (+) False CI01000030_07200104_07202258
TU181432 other upstream 2610529 4516778 ~ 4517107 (+) False G159816
TU181300 other upstream 2639110 4431800 ~ 4488526 (+) True G159685
TU180187 other upstream 4083863 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 4513343 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 4845266 2279113 ~ 2279192 (+) True G158493
TU183621 other downstream 72063 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 726213 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 1110093 8237965 ~ 8239604 (+) True G162088
TU183922 other downstream 1416710 8544582 ~ 8548325 (+) True G161986
TU184111 other downstream 1440138 8568010 ~ 8571726 (+) True G162137

Expression Profile