RNA id: TU183529


Basic Information

Item Value
RNA id TU183529
length 536
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G161637
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7341969 ~ 7342504 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGCAACCGAACGCTGTCTCGCTGCTTCTGTCAACTCGTGGTCCCTTGATAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGGTCGGTTCAGGACAGACAGACAGACAGACAGATAGGTAGACTGATAGATAGATAGACAGACAGACAGATGGATAGGTGAATGGATGAACGGAAGGATGGATAGACAGATAAGTAGACAGATGGACGGACGGACGGACAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGACGGACGGATGGGTGAATGGATGAATGGAAGGATGGATAGACAGACAGATAAGTAGACAGATGGACGGACGGACGGACAGACAGATAGATAGATAGATAGACAGACGGATGGGCAAATGGGTGAACGGAAGGATGGATAGACAGACAGGTAAGTACACAGATGGATGGGTAGACGGACAGACAGACAGACAGACAGACAGATAGATAGATAGATAGATAGATAGATAGAGAGATAGATAGATAGATAAATAGATAGATTCAGTGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183561 lncRNA upstream 13072 7327381 ~ 7328897 (+) True G161669
TU183545 lncRNA upstream 21089 7320517 ~ 7320880 (+) True G161653
TU183520 lncRNA upstream 21971 7312246 ~ 7319998 (+) True G161628
TU183521 lncRNA upstream 158887 7181691 ~ 7183082 (+) True G161629
TU183610 lncRNA upstream 214097 7127636 ~ 7127872 (+) True G161710
TU183538 lncRNA downstream 4057 7346561 ~ 7348291 (+) True G161646
TU183647 lncRNA downstream 15831 7358335 ~ 7358719 (+) True G161745
TU183649 lncRNA downstream 17748 7360252 ~ 7360494 (+) True G161747
TU183651 lncRNA downstream 20681 7363185 ~ 7363424 (+) True G161749
TU183660 lncRNA downstream 34813 7377317 ~ 7377703 (+) True G161758
CI01000030_07307842_07309188.mRNA mRNA upstream 32192 7307842 ~ 7309777 (+) True CI01000030_07307842_07309188
CI01000030_07296570_07302079.mRNA mRNA upstream 39345 7296570 ~ 7302624 (+) True CI01000030_07296570_07302079
CI01000030_07261271_07270990.mRNA mRNA upstream 69941 7261271 ~ 7272028 (+) True CI01000030_07261271_07270990
CI01000030_07216807_07247307.mRNA mRNA upstream 94633 7216807 ~ 7247336 (+) True CI01000030_07216807_07247307
CI01000030_07205352_07214486.mRNA mRNA upstream 127417 7205352 ~ 7214552 (+) True CI01000030_07205352_07214486
CI01000030_07483843_07492567.mRNA mRNA downstream 141339 7483843 ~ 7492605 (+) True CI01000030_07483843_07492567
CI01000030_07521446_07540249.mRNA mRNA downstream 178877 7521381 ~ 7540476 (+) True CI01000030_07521446_07540249
CI01000030_07554965_07558766.mRNA mRNA downstream 212226 7554730 ~ 7559642 (+) True CI01000030_07554965_07558766
CI01000030_07601044_07646747.mRNA mRNA downstream 258540 7601044 ~ 7647865 (+) False CI01000030_07601044_07646747
CI01000030_07673227_07694020.mRNA mRNA downstream 330723 7673227 ~ 7694020 (+) True CI01000030_07673227_07694020
TU183621 other upstream 139484 7199935 ~ 7200017 (+) True G161721
TU181432 other upstream 2824862 4516778 ~ 4517107 (+) False G159816
TU181300 other upstream 2853443 4431800 ~ 4488526 (+) True G159685
TU180187 other upstream 4298196 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 4727676 2595876 ~ 2614293 (+) True G158416
TU183810 other downstream 511581 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 895461 8237965 ~ 8239604 (+) True G162088
TU183922 other downstream 1202078 8544582 ~ 8548325 (+) True G161986
TU184111 other downstream 1225506 8568010 ~ 8571726 (+) True G162137
TU184486 other downstream 2013899 9356403 ~ 9357014 (+) False G162449

Expression Profile