RNA id: CI01000046_03606941_03615212.mRNA



Basic Information


Item Value
RNA id CI01000046_03606941_03615212.mRNA
length 1002
RNA type mRNA
GC content 0.44
exon number 7
gene id CI01000046_03606941_03615212
representative True

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3606717 ~ 3615212 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTATGAACAACCGAGTCCCATCTAGCAAGAGATACCAGCCAACTGAATATGAGCATGCAGCCAACTGTGCCACGCATGGATTCTGGATCATTCCCAGTATCATGGGCAGCTCAGTGTTGTACTTCCTCTCTGATGACCAGTGGGAGACCATCTCTGCATGGATGTATGGTACAGGTCTGTCTGGACTGTTCATCATGTCCACCATGTTCCATACAGTGTCCTGGAAGAAAAGTCATCTCAGGAAGGTGGAGCAGCGATTCCACATGTGCGACAGGATGGTGATATATTTCTTTATAGCTGCATCTTATGCACCCTGGCTGAACCTGAGAGAACTAGGACCCTGGGCTGTCCACATGCGCTGGTTGGTGTGGATCATGGCCTGCGCTGGCTCTGCCTATGTCTTCTTTTTTCATGAGAAGAACAAAATACTAGACTTACTGTGCTACACTGCCATGGGAGCTGTTCCTGCAGTTGTTCTTCTGTCAATGAGAGACCTGTTTAAACTGAATGTATTATTTCAGCCTAACAGAGAGGGTATATTAGAGCTGTCAGTGGGCGGAGTCTTCTACTGCCTGGGAATTGTCTTCTTCAAGAGTGATGGCCTCATCCCATTCGCTCATGCCATCTGGCACGTCTTTGTGGCAGTGGGGGCAGGCATACACTATTACGCCATCTGGAGGTACTTGTATGCAACGGGGACCAGCCAAATCAAAATATCCAGGCAGAATGTGTATAATACAGAAGACACTATCGAAATAACATTCCACGTCCTTTAGCAGAGCTATCTACTGCCTTTTAACACATTTGAATGATAGATGTTAATTTATTGACAGTTGCTGGTTGTAGAGAAGTATTTCTACTACTGTGATCTTGTAATTATGACTATGAACAAAAATGTTAGAAATGGCTTTGTAATTGTTGCACAATGGATCCTATAGGGTTGTGAGATAGGTGGAAAGATATAGAGGATAACAGGATTTATTATCCATGTGAAATTAAA

Function


GO:

id name namespace
GO:0003007 heart morphogenesis biological_process

KEGG:

id description
K11064 MMD; monocyte to macrophage differentiation protein

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU225081 lncRNA downstream 40562 3565944 ~ 3566155 (-) True G198289
TU225110 lncRNA downstream 46177 3560231 ~ 3560540 (-) True G198318
TU225099 lncRNA downstream 52465 3552760 ~ 3554252 (-) True G198307
TU225073 lncRNA downstream 54027 3551499 ~ 3552690 (-) True G198281
TU225027 lncRNA downstream 63191 3543300 ~ 3543526 (-) True G198264
TU225030 lncRNA upstream 50031 3665243 ~ 3800101 (-) False G198265
TU225083 lncRNA upstream 104807 3720019 ~ 3721789 (-) True G198291
TU225047 lncRNA upstream 109567 3724779 ~ 3800101 (-) False G198265
TU225037 lncRNA upstream 117217 3732429 ~ 3800101 (-) False G198265
TU225029 lncRNA upstream 139051 3754263 ~ 3800101 (-) False G198265
CI01000046_03140684_03161621.mRNA mRNA downstream 445096 3140382 ~ 3161621 (-) True CI01000046_03140684_03161621
CI01000046_03095399_03129278.mRNA mRNA downstream 477065 3094953 ~ 3129652 (-) True CI01000046_03095399_03129278
CI01000046_03080433_03083966.mRNA mRNA downstream 522425 3080433 ~ 3084292 (-) True CI01000046_03080433_03083966
CI01000046_03067420_03068783.mRNA mRNA downstream 537934 3067367 ~ 3068783 (-) True CI01000046_03067420_03068783
CI01000046_02972183_02978771.mRNA mRNA downstream 627946 2972183 ~ 2978771 (-) True CI01000046_02972183_02978771
CI01000046_03635227_03641081.mRNA mRNA upstream 19768 3634980 ~ 3641081 (-) True CI01000046_03635227_03641081
CI01000046_03643306_03647935.mRNA mRNA upstream 26970 3642182 ~ 3647935 (-) True CI01000046_03643306_03647935
CI01000046_03761959_03768003.mRNA mRNA upstream 145239 3760451 ~ 3768116 (-) True CI01000046_03761959_03768003
CI01000046_03777712_03789322.mRNA mRNA upstream 162379 3777591 ~ 3789340 (-) False CI01000046_03777712_03789322
CI01000046_03825822_03873637.mRNA mRNA upstream 209953 3825165 ~ 3874959 (-) True CI01000046_03825822_03873637
TU224633 other downstream 738923 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU223112 other downstream 1438073 2168266 ~ 2168644 (-) True G196463
TU221589 other downstream 2826424 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU221617 other downstream 2930589 670736 ~ 676128 (-) True G195098
TU221614 other downstream 3180391 407470 ~ 426326 (-) True G195097
TU225032 other upstream 142411 3757623 ~ 3800101 (-) False G198265
TU225919 other upstream 2482147 6097359 ~ 6097674 (-) True G199054
TU225878 other upstream 2748966 6364178 ~ 6375406 (-) True G199014
TU226000 other upstream 2962768 6577980 ~ 6592925 (-) False G199130
TU226079 other upstream 3211473 6826685 ~ 6830453 (-) True G199181

Expression Profile