RNA id: CI01000046_03643306_03647935.mRNA


Basic Information

Item Value
RNA id CI01000046_03643306_03647935.mRNA
length 2282
RNA type mRNA
GC content 0.40
exon number 8
gene id CI01000046_03643306_03647935
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3642182 ~ 3647935 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGAGTCAGACTTGAATGAAATGGAGATCCAGCTGGACAATGGCTTTAAGAACAATAGTGAGCAGGAAGATCTTCAAGAGACTGTAACAGCAGAGCTTTGGCCCCACTTGTGTATGAAATTGCCGAAATCAGGGAGCGAGAGAGCAGTCGGAGTGAATTCGTGTCGACTGTCCAGAGTCCGCGAATTCAAGTCCGTCCACCAGCTGAACAACCGAGAGCGAACATCCTTACAAATATTACCACAAGAAGCGGAACATCGTTTCAGGCTGAGGTACAAACTGATTGAAGATAATGTCACTCCACCAGTTTTTGTTGGAACCCATCACATGCCACGCATGGAACCGGGACAGGACCCTCCAAACAATCACGAAGTCCATATATACAAGAAAAGTGGAAATCAGTGGGTGAAAGCTCAAGAACTAAAAGAACACAATGGGCACATCACAGGCATTGACTGGGCTCCTAAAAGTGATCGTATTGTGACTTGTGGAGCGGACCGGAATGCTTATGTATGGAGTCAAAAGGACGGCGTGTGGAAACCCACCCTTGTTATTCTCAGGATCAACCGTGCTGCCACGTTTGTAAAATGGTCTCCACTGGAGAACAAGTTTGCAGTGGGGAGTGGAGCACGACTCATATCCGTTTGCTACTTTGAGTCTGAAAATGATTGGGTATTTTCTGCATACATCAAGGAGGTGGATGAGAAACCAGCTCCAACCCCATGGGGGTCCAAGATGCCCTTTGGGCAGGTGATGGCAGAGTTTGGCGGGGCAGGAAGTGGAGGATGGGTTCACAGCGTCTGTTTCTCAGCCAGTGGGAACAGACTGGCTTGGGTCAGCCATGACAGCACTGTCACTGTAGTGGACCCCACAATAAGCTCAACGCCAAGTCAGCTGAAGACAGAATTCCTTGCCCTTTTGAGTGTGACTTTTGTTTCTGAGAACAACATTGTGGCAGCAGGTCACGACTGCTGCCCTATGCTGTTCAGTTTTGATGATGGTGGAAACTTGACCTTCATATCCAAGTTGGACATTCCAAAGCAGAGCATCCAGCGCAACATTTCTGCCATGGAGCGCTTCCGCAACATGGACAAGAGGGCCACCACTGAGGACCGCAATAGCACTCTAGAAACCCTGCATCAGAACAGCATCACGTAGGCCAAATGATTTAAAAATTGTATATAAACATTACCGTTCAAGAGATTGGGGTAAGGTTTTTTTTTTTTTTTTAATGAATTCAATAAATTAAAATGAATTTGATCAAAAGTGAAAGACTTAGAAAAGATTTATATTTCAAACGCTGCTCTTTTGAGCTTTCTATTCATAAAATAATTCTAAAAAAACTATCACAGTTTCCAAAAAAATATTAAGCAGCACAACTGTTTTCAACATTGATAATAAGAAATGTTTCTTGTAATGATGCTGAAAATTCAGCTTTGCTATCAAAAGAATAAATTACATTTAAAATATATTTCAATACAAAACCATTATTTTAAATTGTAATTATTTTACAATATTACTGGTTTTACTGTAGTTTTGATCAAATAAATGCAGCCTAGGTGAGCATAAGAGACTTTCTTTCAAAAATATTTTAAAAAGTCATACAGACTCCAAACTTTTGAACTGTATATATAAATTATTATTAATTTTGTTTTTTTGTAATTGTGTTCTAATTTTTATTTTTACTTTGCAGCCAAGTGTCTATATATGAAGGAGACAAAAGAGATTGTCGCAAATTCTGCACTACGGGAATTGACGGAGCAATGACCATATGGGATTTCAAGGTTTGTATTTGTATTTTGTAACTTTTATGCCATAGATTTGCTTCCATTTTATGGCTTAAGTCACAGTTAACCTGATTTATGACCATGTTTGCTTAATTCTTTCCACAGACCTTAGAGTCTTCAATCCAGGGCCTGCGGATCATGTAAAACTCGCACCGATCTAGCATGACACAGCACAAGCAATGCAGCTTGAAGACTAACAAGGAGATTTCCGATAACACTTCTGAAAGTTTTTAAATAAAAAAAAAAAAAAAAAAGCACTGAGCAGTGGTGTGAACTGATGTGTGACACTCTTAAAAATGGAAAAAACACTAATGGAAAAGGGGGTTAGGATCTTTGTTTTCTTTTTGTTTGTTTTTTTAAGAAAAAAAAATCTATGCCAAAGCTGGCACCCCAGCAGTGTGTTACGGTTGATCAAGATGTTCTGGCTCTCCAGAGAAACTGGAGAGGAGTTAAATTAAAAGGAGAATTTTATGTAAATGGTCTGCTAGAAATAAA

Function

GO:

id name namespace
GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis biological_process

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225081 lncRNA downstream 76027 3565944 ~ 3566155 (-) True G198289
TU225110 lncRNA downstream 81642 3560231 ~ 3560540 (-) True G198318
TU225099 lncRNA downstream 87930 3552760 ~ 3554252 (-) True G198307
TU225073 lncRNA downstream 89492 3551499 ~ 3552690 (-) True G198281
TU225027 lncRNA downstream 98656 3543300 ~ 3543526 (-) True G198264
TU225030 lncRNA upstream 17308 3665243 ~ 3800101 (-) False G198265
TU225083 lncRNA upstream 72084 3720019 ~ 3721789 (-) True G198291
TU225047 lncRNA upstream 76844 3724779 ~ 3800101 (-) False G198265
TU225037 lncRNA upstream 84494 3732429 ~ 3800101 (-) False G198265
TU225029 lncRNA upstream 106328 3754263 ~ 3800101 (-) False G198265
CI01000046_03635227_03641081.mRNA mRNA downstream 1101 3634980 ~ 3641081 (-) True CI01000046_03635227_03641081
CI01000046_03606941_03615212.mRNA mRNA downstream 26970 3606717 ~ 3615212 (-) True CI01000046_03606941_03615212
CI01000046_03140684_03161621.mRNA mRNA downstream 480561 3140382 ~ 3161621 (-) True CI01000046_03140684_03161621
CI01000046_03095399_03129278.mRNA mRNA downstream 512530 3094953 ~ 3129652 (-) True CI01000046_03095399_03129278
CI01000046_03080433_03083966.mRNA mRNA downstream 557890 3080433 ~ 3084292 (-) True CI01000046_03080433_03083966
CI01000046_03761959_03768003.mRNA mRNA upstream 112516 3760451 ~ 3768116 (-) True CI01000046_03761959_03768003
CI01000046_03777712_03789322.mRNA mRNA upstream 129656 3777591 ~ 3789340 (-) False CI01000046_03777712_03789322
CI01000046_03825822_03873637.mRNA mRNA upstream 177230 3825165 ~ 3874959 (-) True CI01000046_03825822_03873637
CI01000046_03920813_03930435.mRNA mRNA upstream 272300 3920235 ~ 3930634 (-) True CI01000046_03920813_03930435
CI01000046_03946243_03948935.mRNA mRNA upstream 298295 3946230 ~ 3949544 (-) True CI01000046_03946243_03948935
TU224633 other downstream 774388 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU223112 other downstream 1473538 2168266 ~ 2168644 (-) True G196463
TU221589 other downstream 2861889 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU221617 other downstream 2966054 670736 ~ 676128 (-) True G195098
TU221614 other downstream 3215856 407470 ~ 426326 (-) True G195097
TU225032 other upstream 109688 3757623 ~ 3800101 (-) False G198265
TU225919 other upstream 2449424 6097359 ~ 6097674 (-) True G199054
TU225878 other upstream 2716243 6364178 ~ 6375406 (-) True G199014
TU226000 other upstream 2930045 6577980 ~ 6592925 (-) False G199130
TU226079 other upstream 3178750 6826685 ~ 6830453 (-) True G199181

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050469 True 1687 mRNA 0.45 10 NC_007114.7 40796110 ~ 40804455 (+)
bowfin (Amia calva) AMCG00018534 True 2097 mRNA 0.51 16 CM030135.1 13885780 ~ 13902661 (+)