RNA id: TU225032


Basic Information

Item Value
RNA id TU225032
length 2836
RNA type TUCP
GC content 0.46
exon number 4
gene id G198265
representative False

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3665243 ~ 3800101 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTACTCAAATTCATTCAGCACCAACACAGGAAGTCACACAGGAATATGATGTCTTACACATGTGCACTTTTATTGGATTTGAATTAGTCAGTGTACAGGTTGGCCCCACCAAATGTCTGGCACCGCCACGTTCCACACAGCTTTTACAATATGCCCAGGGGGAGAATGGATACCTTTACATCTTGAATGGTAAAGCTTAGTTTTTTGGAACAAAGAAAAAAAAAAAAATTAAAAAAAAAAAAAAAACCCAAGATTTTAAGGCTGAAAGTACAAAAACCCAGACATTGTTTTGTTACATAATTTACATACAATACTACAATGTTAAGTATGCTCCCAATTACTGGGCAGCCTTCATAGAGGCAAATAAGTTTCGGAACAATGCATTTAACAAACATTTGGAATGACTAAAGAAACAAAACAAAAACCATTGAGTCCTCAGATGCATTGTAGAACTTCGGGGATGCTTATTTGCCAAAAAACATTGCCGTCACCTTCACCGTTCCAGTTTTTAGATCCTGAGTCAAGCGCCAAAAATAACAAAAGCCATGCCAATGTTGTCGTTTGAAGTTTTTCTCTGCGCAGTTTGAGTCGGCGTGAAGTGGTAACAGTCCGTTTAGAAGCATTTGCGGTGGACGATGGATGGTCCAGACTCGTCATACTCCTGCTTGCTAATCCACATCTGCTGGAAGGTGGACAGGGAGGCCAGGATGGAACCTCCGATCCAGACAGAGTATTTACGCTCAGGTGGGGCGACCTTGATTTTCATTGTGCTAGGGGCCAGGGATGTGATCTCCTTCTGCATCCTGTCAGCAATGCCAGGGTACATGGTGGTACCACCAGACAATACAGTGTTGGCATACAGGTCCTTACGGATATCGACGTCACACTTCATGATGGAGTTGAAGGTGGTCTCATGGATACCGCAAGACTCCTACCCAAGAAGGATGGCTGGAACAGAGCCTCTGGGCACCTGAACCTCTCATTGCCAATGGTGATGACCTGTCCGTCAGGCAGCTCATAGCTCTTCTCCAGGGAGGAGGAGGAAGCAGCAGTGCCCATCTCCTGCTCGAAGTCAAGAGCCACATAGCAGAGCTTCTCCTTGATGTCACGGACAATTTCCCTCTCAGCTGTGGTGGTGAAGCTGTAGCCTCTCTCGGTGAGGATCTTCATGAGGTAGTCAGTCAGGTCACGGCCAGCCAAGTCCAGACGGAGGATGGCATGGGGCAGGGCATAACCCTCGTAGATGGGCACAGTGTGGGTGACACCATCACCAGAGTCCATCACGATACCAGTGGTACGACCAGAGGCATACAGGGACAGCACAGCCTGGATGGCAACGTACATGGCGGGGGTGTTGAAGGTCTCGAACATGATCTGTAATGAGAGGACAAGTTAACGGATGCTCAAAAAGTTATAGCACATCCACACCCATGCAGGGGTTAGTTGGAAATCTAGAGTAAAGAAACAAAAGTGCACAAAGAATCAGAGTGCGGAGGAGACTGCAAAACAGGCAGGCAAAAGTATAGATAACCTGCTGCTTCCAGCAAAAGATGAGAAACTCAGGAGCTCAGAGGAAACAAAGCCTGGAGGAAGTGAACGAATGAAAAGGAGAACTTAAGTGAAGTAACAGGACAGACAAGAGACTTCAAAGCACCATTTGCTAGCCAAAAACCAACCTGTGTCATCTTTTCCCTGTTGGCTTTGGGGTTCAGGGGGGCCTCTGTGAGCAGGACGGGGTGCTCCTCTGGGGCAACACGCAGCTCGTTGTAGAAGGTGTGATGCCAGATCTTCTCCATATCGTCCCAGTTGGTGACAATACCGTGCTCGATGGGGTACTTCAGGGTCAGGATACCTCTCTTGCTCTGAGCCTCGTCACCAACATAGCTGTCCTTCTGTCCCATACCGACCATGACGCCCTGTAATGAAGGAAAGCATGTTAATTTTTGTAAAATGTTTAGGAATGAGAAAATAGCATGAAAATTCTTATTATTGGTCAGCCCGAAACTATCCTCCGTTTCTCACCTGATGTCTGGGGCGACCCACGATGGATGGGAAGACAGCACGGGGAGCATCATCTCCAGCGAATCCGGCTTTGCACATACCGGATCCGTTGTCAACAACCAGTGCGGCAATTTCATCATCCATGGCTGAACTGTAAAAGAGAGAGGAAAGTGTTTTTGAAGTGCACTGCTGCCATGTAAGAAAGTGTCAGTGAGCATGTGACCATGTGGAGTCAACTTCCTGTTTCATGCTGCATTCTGCAGTCTGACCGCTAGTGGGTGCTAGAGTGACAATGCGCGCCTCAGATATGCCAGACAAAGGAAGTCCCTCTGCATTCTCTCATTATTACCATAAAAGGCAATGGATTGAGCCGCTTTGCGGCTGCCGGCGGTGTGGCACTCAGCCAGTGTCGTATGGTTCAGTAAAAAGGAACAGATTTCGACATTCATCACGCCAGGGCCACTCCCTAAATTCTACACGAATGAAGTTTTACATCCTCTTTCATCCTCGCCTGGTATCAATTACACAACCGAATTTCGACGGGTGTCTGCCCAACATTACTGCGTCACAGATCTGCAGTCACTTCAAATGACTCCATAAGAGCAGACTAAACGCCGAAGCACTTGTGAGAGATCACCATCAGCCCATTCAGTTTATATTCTAGTCTTTATCAATTAGTTTTAAGAAAAATTACTGTTCGACTCAATTATAAGAGCTTAAATGCAACCGGAACACTTTACCCCAGTTATTAAAATTGACCACACCTTATATTTCGAAACGCTTTAACGTGAATGAAATACTTGACTAATCTTCAGTTTTAAGAAAAGACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225083 lncRNA downstream 35834 3720019 ~ 3721789 (-) True G198291
TU225081 lncRNA downstream 191468 3565944 ~ 3566155 (-) True G198289
TU225110 lncRNA downstream 197083 3560231 ~ 3560540 (-) True G198318
TU225099 lncRNA downstream 203371 3552760 ~ 3554252 (-) True G198307
TU225073 lncRNA downstream 204933 3551499 ~ 3552690 (-) True G198281
TU225078 lncRNA upstream 90919 3891020 ~ 3891811 (-) True G198286
TU225197 lncRNA upstream 92347 3892448 ~ 3892862 (-) True G198404
TU225198 lncRNA upstream 93504 3893605 ~ 3893934 (-) True G198405
TU225199 lncRNA upstream 95435 3895536 ~ 3897457 (-) True G198406
TU225200 lncRNA upstream 97887 3897988 ~ 3898214 (-) True G198407
CI01000046_03643306_03647935.mRNA mRNA downstream 109688 3642182 ~ 3647935 (-) True CI01000046_03643306_03647935
CI01000046_03635227_03641081.mRNA mRNA downstream 116542 3634980 ~ 3641081 (-) True CI01000046_03635227_03641081
CI01000046_03606941_03615212.mRNA mRNA downstream 142411 3606717 ~ 3615212 (-) True CI01000046_03606941_03615212
CI01000046_03140684_03161621.mRNA mRNA downstream 596002 3140382 ~ 3161621 (-) True CI01000046_03140684_03161621
CI01000046_03095399_03129278.mRNA mRNA downstream 627971 3094953 ~ 3129652 (-) True CI01000046_03095399_03129278
CI01000046_03825822_03873637.mRNA mRNA upstream 25064 3825165 ~ 3874959 (-) True CI01000046_03825822_03873637
CI01000046_03920813_03930435.mRNA mRNA upstream 120134 3920235 ~ 3930634 (-) True CI01000046_03920813_03930435
CI01000046_03946243_03948935.mRNA mRNA upstream 146129 3946230 ~ 3949544 (-) True CI01000046_03946243_03948935
CI01000046_03951775_03952660.mRNA mRNA upstream 151080 3951181 ~ 3953043 (-) True CI01000046_03951775_03952660
CI01000046_03967726_03970443.mRNA mRNA upstream 167356 3967457 ~ 3970713 (-) True CI01000046_03967726_03970443
TU224633 other downstream 889829 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU223112 other downstream 1588979 2168266 ~ 2168644 (-) True G196463
TU221589 other downstream 2977330 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU221617 other downstream 3081495 670736 ~ 676128 (-) True G195098
TU221615 other downstream 3331297 407423 ~ 426326 (-) False G195097
TU225919 other upstream 2297258 6097359 ~ 6097674 (-) True G199054
TU225878 other upstream 2564077 6364178 ~ 6375406 (-) True G199014
TU226000 other upstream 2777879 6577980 ~ 6592925 (-) False G199130
TU226079 other upstream 3026584 6826685 ~ 6830453 (-) True G199181

Expression Profile