RNA id: TU225031


Basic Information

Item Value
RNA id TU225031
length 3511
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G198265
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3665243 ~ 3800101 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTACTCAAATTCATTCAGCACCAACACAGGAAGTCACACAGGAATATGATGTCTTACACATGTGCACTTTTATTGGATTTGAATTAGTCAGTGTACAGGTTGGCCCCACCAAATGTCTGGCACCGCCACGTTCCACACAGCTTTTACAATATGCCCAGGGGGAGAATGGATACCTTTACATCTTGAATGGTAAAGCTTAGTTTTTTGGAACAAAGAAAAAAAAAAAAATTAAAAAAAAAAAAAAAACCCAAGATTTTAAGGCTGAAAGTACAAAAACCCAGACATTGTTTTGTTACATAATTTACATACAATACTACAATGTTAAGTATGCTCCCAATTACTGGGCAGCCTTCATAGAGGCAAATAAGTTTCGGAACAATGCATTTAACAAACATTTGGAATGACTAAAGAAACAAAACAAAAACCATTGAGTCCTCAGATGCATTGTAGAACTTCGGGGATGCTTATTTGCCAAAAAACATTGCCGTCACCTTCACCGTTCCAGTTTTTAGATCCTGAGTCAAGCGCCAAAAATAACAAAAGCCATGCCAATGTTGTCGTTTGAAGTTTTTCTCTGCGCAGTTTGAGTCGGCGTGAAGTGGTAACAGTCCGTTTAGAAGCATTTGCGGTGGACGATGGATGGTCCAGACTCGTCATACTCCTGCTTGCTAATCCACATCTGCTGGAAGGTGGACAGGGAGGCCAGGATGGAACCTCCGATCCAGACAGAGTATTTACGCTCAGGTGGGGCGATGATCTGATTTTCATTGTGCTAGGGGCCAGGGATGTGATCTCCTTCTGCATCCTGTCAGCAATGCCAGGGTACATGGTGGTACCACCAGACAATACAGTGTTGGCATACAGGTCCTTACGGATATCGACGTCACACTTCATGATGGAGTTGAAGGTGGTCTCATGGATACCGCAAGACTCCATACCTGCAGAGCGAGAGAGAAGGTTAACCTTAGTTCTTCAATTCTAGAGTACATACACACCAGGTAACGTTTGTCAGGAAACCTACCCAAGAAGGATGGCTGGAACAGAGCCTCTGGGCACCTGAACCTCTCATTGCCAATGGTGATGACCTGTCCGTCAGGCAGCTCATAGCTCTTCTCCAGGGAGGAGGAGGAAGCAGCAGTGCCCATCTCCTGCTCGAAGTCAAGAGCCACATAGCAGAGCTTCTCCTTGATGTCACGGACAATTTCCCTCTCAGCTGTGGTGGTGAAGCTGTAGCCTCTCTCGGTGAGGATCTTCATGAGGTAGTCAGTCAGGTCACGGCCAGCCAAGTCCAGACGGAGGATGGCATGGGGCAGGGCATAACCCTCGTAGATGGGCACAGTGTGGGTGACACCATCACCAGAGTCCATCACGATACCAGTGGTACGACCAGAGGCATACAGGGACAGCACAGCCTGGATGGCAACGTACATGGCGGGGGTGTTGAAGGTCTCGAACATGATCTGTAATGAGAGGACAAGTTAACGGATGCTCAAAAAGTTATAGCACATCCACACCCATGCAGGGGTTAGTTGGAAATCTAGAGTAAAGAAACAAAAGTGCACAAAGAATCAGAGTGCGGAGGAGACTGCAAAACAGGCAGGCAAAAGTATAGATAACCTGCTGCTTCCAGCAAAAGATGAGAAACTCAGGAGCTCAGAGGAAACAAAGCCTGGAGGAAGTGAACGAATGAAAAGGAGAACTTAAGTGAAGTAACAGGACAGACAAGAGACTTCAAAGCACCATTTGCTAGCCAAAAACCAACCTGTGTCATCTTTTCCCTGTTGGCTTTGGGGTTCAGGGGGGCCTCTGTGAGCAGGACGGGGTGCTCCTCTGGGGCAACACGCAGCTCGTTGTAGAAGGTGTGATGCCAGATCTTCTCCATATCGTCCCAGTTGGTGACAATACCGTGCTCGATGGGGTACTTCAGGGTCAGGATACCTCTCTTGCTCTGAGCCTCGTCACCAACATAGCTGTCCTTCTGTCCCATACCGACCATGACGCCTGATGTCTGGGGCGACCCACGATGGATGGGAAGACAGCACGGGGAGCATCATCTCCAGCGAATCCGGCTTTGCACATACCGGATCCGTTGTCAACAACCAGTGCGGCAATTTCATCATCCATGGCTGAACTGTAAAAGAGAGAGGAAAGTGTTTTTGAAGTGCACTGCTGCCATGTAAGAAAGTGTCAGTGAGCATGTGACCATGTGGAGTCAACTTCCTGTTTCATGCTGCATTCTGCAGTCTGACCGCTAGTGGGTGCTAGAGTGACAATGCGCGCCTCAGATATGCCAGACAAAGGAAGTCCCTCTGCATTCTCTCATTATTACCATAAAAGGCAATGGATTGAGCCGCTTTGCGGCTGCCGGCGGTGTGGCACTCAGCCAGTGTCGTATGGTTCAGTAAAAAGGAACAGATTTCGACATTCATCACGCCAGGGCCACTCCCTAAATTCTACACGAATGAAGTTTTACATCCTCTTTCATCCTCGCCTGGTATCAATTACACAACCGAATTTCGACGGGTGTCTGCCCAACATTACTGCGTCACAGATCTGCAGTCACTTCAAATGACTCCATAAGAGCAGACTAAACGCCGAAGCACTTGTGAGAGATCACCATCAGCCCATTCAGTTTATATTCTAGTCTTTATCAATTAGTTTTAAGAAAAATTACTGTTCGACTCAATTATAAGAGCTTAAATGCAACCGGAACACTTTACCCCAGTTATTAAAATTGACCACACCTTATATTTCGAAACGCTTTAACGTGAATGAAATACTTGACTAATCTTCAGTTTTAAGGTTAAGACTGAAGGGATGCATGCTGCATACTACATTATAAAGCGCCAGTATTCACTAAAAATGTTGGGTGTGTTGAAAGTGAACTAATAACCAATCTTTGATAATTTAGTGATCGCATAAGTGAATTAGATTCACCAGGTTTACAGAAGGTGAACGCTGGTTAGCCGGCTAGCTAAACTAGGTCACACCCTTCTGCAGCACTGCCTGCACAAAGAACTTCCCATGCCGGCTATCCATCAAGTGTGTAACATGCCTCACAAATAAATACCCTTAAAACTGTCAAGTCAAGTTTATAGCTGTTAAAGCACGGTTAATCAGAGCACATCTTAAATGTTAAGAAAGGCGAACACTTATTTCACACCGGCCCATTTAATGTCGTGCCTACAACGGATACCGTCGTTTCCACCTGACATGTCCAGTACAGTACATAAAGTTATGATAATACAGCAAACATTTACATAAAAATAACTACATAATAAATAACTACCGTTTTGAAGCAGGAGTTAAAACTTAAAAGCGAAAAGACCGGTAACTTAGTCGAATTTCTTTATCCAGTTTTAATTATACATCATAATTACAGGTTTAAATTAATATTAATGAATTAAAAATGCAATAAAAGCTGAAAAATCAACTCACCTTAGGTTTGGGGGGGTTTGTCGACTTAAGAGAATGGGTTACAAGCTGATGATATTCCGCACTAGCTGCGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225084 lncRNA downstream 7061 3788510 ~ 3789324 (-) True CI01000046_03777712_03789322
TU225083 lncRNA downstream 74596 3720019 ~ 3721789 (-) True G198291
TU225081 lncRNA downstream 230230 3565944 ~ 3566155 (-) True G198289
TU225110 lncRNA downstream 235845 3560231 ~ 3560540 (-) True G198318
TU225099 lncRNA downstream 242133 3552760 ~ 3554252 (-) True G198307
TU225078 lncRNA upstream 90919 3891020 ~ 3891811 (-) True G198286
TU225197 lncRNA upstream 92347 3892448 ~ 3892862 (-) True G198404
TU225198 lncRNA upstream 93504 3893605 ~ 3893934 (-) True G198405
TU225199 lncRNA upstream 95435 3895536 ~ 3897457 (-) True G198406
TU225200 lncRNA upstream 97887 3897988 ~ 3898214 (-) True G198407
CI01000046_03777712_03789322.mRNA mRNA downstream 7045 3777591 ~ 3789340 (-) False CI01000046_03777712_03789322
CI01000046_03761959_03768003.mRNA mRNA downstream 28269 3760451 ~ 3768116 (-) True CI01000046_03761959_03768003
CI01000046_03643306_03647935.mRNA mRNA downstream 148450 3642182 ~ 3647935 (-) True CI01000046_03643306_03647935
CI01000046_03635227_03641081.mRNA mRNA downstream 155304 3634980 ~ 3641081 (-) True CI01000046_03635227_03641081
CI01000046_03606941_03615212.mRNA mRNA downstream 181173 3606717 ~ 3615212 (-) True CI01000046_03606941_03615212
CI01000046_03825822_03873637.mRNA mRNA upstream 25064 3825165 ~ 3874959 (-) True CI01000046_03825822_03873637
CI01000046_03920813_03930435.mRNA mRNA upstream 120134 3920235 ~ 3930634 (-) True CI01000046_03920813_03930435
CI01000046_03946243_03948935.mRNA mRNA upstream 146129 3946230 ~ 3949544 (-) True CI01000046_03946243_03948935
CI01000046_03951775_03952660.mRNA mRNA upstream 151080 3951181 ~ 3953043 (-) True CI01000046_03951775_03952660
CI01000046_03967726_03970443.mRNA mRNA upstream 167356 3967457 ~ 3970713 (-) True CI01000046_03967726_03970443
TU224633 other downstream 928591 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU223112 other downstream 1627741 2168266 ~ 2168644 (-) True G196463
TU221589 other downstream 3016092 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU221617 other downstream 3120257 670736 ~ 676128 (-) True G195098
TU221614 other downstream 3370059 407470 ~ 426326 (-) True G195097
TU225919 other upstream 2297258 6097359 ~ 6097674 (-) True G199054
TU225878 other upstream 2564077 6364178 ~ 6375406 (-) True G199014
TU226000 other upstream 2777879 6577980 ~ 6592925 (-) False G199130
TU226079 other upstream 3026584 6826685 ~ 6830453 (-) True G199181

Expression Profile