RNA id: TU225197


Basic Information

Item Value
RNA id TU225197
length 415
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G198404
representative True

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3892448 ~ 3892862 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGCACGGGTATATTTGTAGCAACAGCCAAAAATACACTGTATTGGTCAAAATTATTGATTTTTCTTTTATGCCGAAAATCCTTAGGATATCATAGATCATGTTCCATGAAGATATTTTGTAAATTTCCTACCGTAAATATATCAAAACTTTATTTTTGTGAGTGGATATGCATTGCTAAGGACTTCATTTGGACAACTTTAAAGGCCTTTTTCTCAATATTTTGATTTTTTTGCACCCTCGAGATTCCAGATTTTCAAATAGTTATATCTCAACCAAATACTGTCCTATCATAACAAACCATATACCAATGGACAGATTATTTATTCAGCTTTCAGGTGATGTATAAATCTCTTATGATTAGTTTTGTGGTCCAGGGTCACATATAGTGTCCAATACTAAAGCTGGATATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225078 lncRNA downstream 637 3891020 ~ 3891811 (-) True G198286
TU225037 lncRNA downstream 92347 3732429 ~ 3800101 (-) False G198265
TU225198 lncRNA upstream 743 3893605 ~ 3893934 (-) True G198405
TU225199 lncRNA upstream 2674 3895536 ~ 3897457 (-) True G198406
TU225200 lncRNA upstream 5126 3897988 ~ 3898214 (-) True G198407
TU225201 lncRNA upstream 5415 3898277 ~ 3898515 (-) True G198408
TU225202 lncRNA upstream 5745 3898607 ~ 3898900 (-) True G198409
CI01000046_03825822_03873637.mRNA mRNA downstream 17489 3825165 ~ 3874959 (-) True CI01000046_03825822_03873637
CI01000046_03777712_03789322.mRNA mRNA downstream 103108 3777591 ~ 3789340 (-) False CI01000046_03777712_03789322
CI01000046_03761959_03768003.mRNA mRNA downstream 124332 3760451 ~ 3768116 (-) True CI01000046_03761959_03768003
CI01000046_03643306_03647935.mRNA mRNA downstream 244513 3642182 ~ 3647935 (-) True CI01000046_03643306_03647935
CI01000046_03635227_03641081.mRNA mRNA downstream 251367 3634980 ~ 3641081 (-) True CI01000046_03635227_03641081
CI01000046_03920813_03930435.mRNA mRNA upstream 27373 3920235 ~ 3930634 (-) True CI01000046_03920813_03930435
CI01000046_03946243_03948935.mRNA mRNA upstream 53368 3946230 ~ 3949544 (-) True CI01000046_03946243_03948935
CI01000046_03951775_03952660.mRNA mRNA upstream 58319 3951181 ~ 3953043 (-) True CI01000046_03951775_03952660
CI01000046_03967726_03970443.mRNA mRNA upstream 74595 3967457 ~ 3970713 (-) True CI01000046_03967726_03970443
CI01000046_04013708_04017841.mRNA mRNA upstream 119046 4011908 ~ 4017841 (-) True CI01000046_04013708_04017841
TU225032 other downstream 92347 3757623 ~ 3800101 (-) False G198265
TU224633 other downstream 1024654 2866259 ~ 2867794 (-) True CI01000046_02866255_02867695
TU223112 other downstream 1723804 2168266 ~ 2168644 (-) True G196463
TU221589 other downstream 3112155 777733 ~ 780293 (-) True CI01000046_00777923_00780186
TU221617 other downstream 3216320 670736 ~ 676128 (-) True G195098
TU225919 other upstream 2204497 6097359 ~ 6097674 (-) True G199054
TU225878 other upstream 2471316 6364178 ~ 6375406 (-) True G199014
TU226000 other upstream 2685118 6577980 ~ 6592925 (-) False G199130
TU226079 other upstream 2933823 6826685 ~ 6830453 (-) True G199181

Expression Profile